RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, human

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-244	ENST00000636147	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	KLHL3	Q9UH77	587 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	TRIM64C	A6NLI5	447 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	EIF2S1	P05198	315 aa	Known RBP	10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	IFI30	P13284	250 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	TUFM	P49411	452 aa	Known RBP	10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	RPS3A	P61247	264 aa	Known RBP	10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	ZNF404	Q494X3	552 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	C6orf136	Q5SQH8	315 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	PRAMEF19	Q5SWL8	479 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	C1QTNF12	Q5T7M4	302 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	CCBE1	Q6UXH8	406 aa	Predicted RBP	10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	GPRIN1	Q7Z2K8	1008 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	GALNT10	Q86SR1	603 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	HS6ST3	Q8IZP7	471 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	TMEM199	Q8N511	208 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	CENPI	Q92674	756 aa	Predicted RBP	10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	TRIM63	Q969Q1	353 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	PTER	Q96BW5	349 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	ALPK1	Q96QP1	1244 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	SCUBE2	Q9NQ36	999 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	PRDM8	Q9NQV8	689 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	ABCC13	Q9NSE7	274 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	SPAST	Q9UBP0	616 aa		10.89	□□□□□ -0.67
CLN3-244	ENST00000636147	UGT2B11	O75310	529 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	HOXB8	P17481	243 aa	Predicted RBP	10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	GSTM2	P28161	218 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	HTR1B	P28222	390 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	KCNC1	P48547	511 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	ZNF135	P52742	658 aa	Predicted RBP	10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	AIF1	P55008	147 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	CASP9	P55211	416 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	NEK5	Q6P3R8	708 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	OR13F1	Q8NGS4	319 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	OR5K1	Q8NHB7	308 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	TP63	Q9H3D4	680 aa	Predicted RBP	10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	ABCB9	Q9NP78	766 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	CCNB1IP1	Q9NPC3	277 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	CD300A	Q9UGN4	299 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147		A0A1W2PQ67	120 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	SAGE2P	A6NJ88	616 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	RPP40	O75818	363 aa	Known RBP	10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	ITGBL1	O95965	494 aa	Predicted RBP	10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	PKM	P14618	531 aa	Known RBP	10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	OR1G1	P47890	313 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	CREB5	Q02930	508 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	OR4D1	Q15615	310 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	TIGD6	Q17RP2	521 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	SPANXN4	Q5MJ08	99 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	LIX1	Q8N485	282 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	NUDT8	Q8WV74	236 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	NRCAM	Q92823	1304 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	SERPINB11	Q96P15	392 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	ARFGEF1	Q9Y6D6	1849 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	IQCF5	A8MTL0	148 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147		H3BN98	237 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	ZW10	O43264	779 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	SBK3	P0C264	359 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	CRHBP	P24387	322 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	MC4R	P32245	332 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	GDF5	P43026	501 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	CLCNKB	P51801	687 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	DGKK	Q5KSL6	1271 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	TYW3	Q6IPR3	259 aa	Known RBP	10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	KLHL17	Q6TDP4	642 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	SUN5	Q8TC36	379 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	ATL1	Q8WXF7	558 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	GML	Q99445	158 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	SMO	Q99835	787 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	ZYG11B	Q9C0D3	744 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	DYRK4	Q9NR20	520 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	ZNF490	Q9ULM2	529 aa	Predicted RBP	10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	PCDHGA11	Q9Y5H2	935 aa		10.88	□□□□□ -0.67
CLN3-244	ENST00000636147	GNG14	A0A1W2PPG7	69 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	UBFD1	O14562	309 aa	Known RBP	10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	RFPL2	O75678	378 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	OTC	P00480	354 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	LCK	P06239	509 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	GNPDA1	P46926	289 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	RAPSN	Q13702	412 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	SLC39A12	Q504Y0	691 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	HACD2	Q6Y1H2	254 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	TOP6BL	Q8N6T0	577 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	C19orf18	Q8NEA5	215 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	VPS37A	Q8NEZ2	397 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	GPRC5A	Q8NFJ5	357 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	MRGPRX2	Q96LB1	330 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	APOLD1	Q96LR9	279 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	PCDHGC4	Q9Y5F7	938 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	CCDC182	A6NF36	153 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147		F5H5T6	163 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	EPN2	O95208	641 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	CYP2C18	P33260	490 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	MAD2L1	Q13257	205 aa	Predicted RBP	10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	TP53BP2	Q13625	1128 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	SIRPB2	Q5JXA9	342 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	ANKRD34A	Q69YU3	496 aa		10.87	□□□□□ -0.67
CLN3-244	ENST00000636147	RAB43	Q86YS6	212 aa		10.87	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms