RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 PANX3Q96QZ0 392 aa19.88■□□□□ 0.77
PTCD3-220ENST00000627371 WWP1Q9H0M0 922 aa19.88■□□□□ 0.77
PTCD3-220ENST00000627371 ABCG4Q9H172 646 aa19.88■□□□□ 0.77
PTCD3-220ENST00000627371 POT1Q9NUX5 634 aa19.88■□□□□ 0.77
PTCD3-220ENST00000627371 FBXO5Q9UKT4 447 aa19.88■□□□□ 0.77
PTCD3-220ENST00000627371 WASF3Q9UPY6 502 aa19.88■□□□□ 0.77
PTCD3-220ENST00000627371 MED19A0JLT2 244 aaPredicted RBP19.87■□□□□ 0.77
PTCD3-220ENST00000627371 HYAL3O43820 417 aaPredicted RBP19.87■□□□□ 0.77
PTCD3-220ENST00000627371 VIPP01282 170 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 ESR1P03372 595 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 RPE65Q16518 533 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 ZNF789Q5FWF6 425 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 HES3Q5TGS1 186 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 ZNF449Q6P9G9 518 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 TRMT10BQ6PF06 316 aaKnown RBP19.87■□□□□ 0.77
PTCD3-220ENST00000627371 TMPRSS12Q86WS5 348 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 TRIM48Q8IWZ4 208 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 GALNT15Q8N3T1 639 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 GSDMBQ8TAX9 411 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 SH3KBP1Q96B97 665 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 CXorf40BQ96DE9 158 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 RMDN2Q96LZ7 410 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 OR52A5Q9H2C5 316 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 FBXO6Q9NRD1 293 aaPredicted RBP19.87■□□□□ 0.77
PTCD3-220ENST00000627371 CRYL1Q9Y2S2 319 aa19.87■□□□□ 0.77
PTCD3-220ENST00000627371 NCOR2Q9Y618 2525 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 SLC5A10A0PJK1 596 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 IQCF5A8MTL0 148 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 H3BMM5 538 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 NTN3O00634 580 aaPredicted RBP19.86■□□□□ 0.77
PTCD3-220ENST00000627371 ZW10O43264 779 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 RPLP0P05388 317 aaKnown RBP19.86■□□□□ 0.77
PTCD3-220ENST00000627371 F7P08709 466 aaPredicted RBP19.86■□□□□ 0.77
PTCD3-220ENST00000627371 MTHFD1P11586 935 aaKnown RBP19.86■□□□□ 0.77
PTCD3-220ENST00000627371 ITGB6P18564 788 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 FMO4P31512 558 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 CCR7P32248 378 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 PREPP48147 710 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 MPP1Q00013 466 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 PLOD1Q02809 727 aaPredicted RBP19.86■□□□□ 0.77
PTCD3-220ENST00000627371 BOP1Q14137 746 aaKnown RBP19.86■□□□□ 0.77
PTCD3-220ENST00000627371 SYTL3Q4VX76 610 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 CDCP2Q5VXM1 449 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 CAPRIN2Q6IMN6 1127 aaKnown RBP19.86■□□□□ 0.77
PTCD3-220ENST00000627371 KIAA0408Q6ZU52 694 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 TMPRSS7Q7RTY8 843 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 CCDC25Q86WR0 208 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 KRT222Q8N1A0 295 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 Q8N9G6 341 aaPredicted RBP19.86■□□□□ 0.77
PTCD3-220ENST00000627371 C2CD4AQ8NCU7 369 aaPredicted RBP19.86■□□□□ 0.77
PTCD3-220ENST00000627371 LRRN4CLQ8ND94 238 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 SPDYE1Q8NFV5 336 aaPredicted RBP19.86■□□□□ 0.77
PTCD3-220ENST00000627371 C12orf66Q96MD2 445 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 SLC38A3Q99624 504 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 LDHAL6BQ9BYZ2 381 aaPredicted RBP19.86■□□□□ 0.77
PTCD3-220ENST00000627371 LRRN3Q9H3W5 708 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 UCK1Q9HA47 277 aa19.86■□□□□ 0.77
PTCD3-220ENST00000627371 PPANQ9NQ55 473 aaKnown RBP19.86■□□□□ 0.77
PTCD3-220ENST00000627371 A0A1W2PQM1 296 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 CASC3O15234 703 aaKnown RBP19.85■□□□□ 0.77
PTCD3-220ENST00000627371 TCEA3O75764 348 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 TOP3BO95985 862 aaKnown RBP19.85■□□□□ 0.77
PTCD3-220ENST00000627371 PKMP14618 531 aaKnown RBP19.85■□□□□ 0.77
PTCD3-220ENST00000627371 PDHA2P29803 388 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 LEPRP48357 1165 aaKnown RBP19.85■□□□□ 0.77
PTCD3-220ENST00000627371 CLDN6P56747 220 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 OR1D5P58170 312 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 CCL7P80098 99 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 SPIDRQ14159 915 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 TEDDM1Q5T9Z0 273 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 GALNT7Q86SF2 657 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 ZNF761Q86XN6 746 aaPredicted RBP19.85■□□□□ 0.77
PTCD3-220ENST00000627371 PALM2Q8IXS6 379 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 RBM12BQ8IXT5 1001 aaKnown RBP19.85■□□□□ 0.77
PTCD3-220ENST00000627371 CACTIN-AS1Q8N1I8 211 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 TMEM159Q96B96 161 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 INSM2Q96T92 566 aaPredicted RBP19.85■□□□□ 0.77
PTCD3-220ENST00000627371 SYNDIG1Q9H7V2 258 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 SLC40A1Q9NP59 571 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 IMP3Q9NV31 184 aaKnown RBP19.85■□□□□ 0.77
PTCD3-220ENST00000627371 KCNK4Q9NYG8 393 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 MOCS1Q9NZB8 636 aa19.85■□□□□ 0.77
PTCD3-220ENST00000627371 LILRA5A6NI73 299 aa19.84■□□□□ 0.77
PTCD3-220ENST00000627371 IFRD1O00458 451 aaPredicted RBP19.84■□□□□ 0.77
PTCD3-220ENST00000627371 B4GAT1O43505 415 aa19.84■□□□□ 0.77
PTCD3-220ENST00000627371 AOAHP28039 575 aa19.84■□□□□ 0.77
PTCD3-220ENST00000627371 ALDH4A1P30038 563 aa19.84■□□□□ 0.77
PTCD3-220ENST00000627371 DEKP35659 375 aaKnown RBP19.84■□□□□ 0.77
PTCD3-220ENST00000627371 CD151P48509 253 aa19.84■□□□□ 0.77
PTCD3-220ENST00000627371 CARSP49589 748 aaKnown RBP19.84■□□□□ 0.77
PTCD3-220ENST00000627371 EPHA4P54764 986 aa19.84■□□□□ 0.77
PTCD3-220ENST00000627371 BRD3Q15059 726 aa19.84■□□□□ 0.77
PTCD3-220ENST00000627371 NAPRTQ6XQN6 538 aa19.84■□□□□ 0.77
PTCD3-220ENST00000627371 TMEM26Q6ZUK4 368 aa19.84■□□□□ 0.77
PTCD3-220ENST00000627371 PDZD3Q86UT5 571 aa19.84■□□□□ 0.77
PTCD3-220ENST00000627371 ASZ1Q8WWH4 475 aa19.84■□□□□ 0.77
PTCD3-220ENST00000627371 MTRF1LQ9UGC7 380 aaKnown RBP19.84■□□□□ 0.77
PTCD3-220ENST00000627371 CLCA2Q9UQC9 943 aa19.84■□□□□ 0.77
PTCD3-220ENST00000627371 CFAP20Q9Y6A4 193 aaKnown RBP19.84■□□□□ 0.77
PTCD3-220ENST00000627371 IGHV1OR21-1A0A087WYE8 117 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms