RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 PI15O43692 258 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 CCR8P51685 355 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 RBBP4Q09028 425 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 ZNF460Q14592 562 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 SGCBQ16585 318 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 CA9Q16790 459 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 ADGRG6Q86SQ4 1221 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 RASGEF1CQ8N431 466 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 KCT2Q8NC54 265 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 ZNF304Q9HCX3 659 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 CRNNQ9UBG3 495 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-219ENST00000620786 TTC24A2A3L6 582 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-219ENST00000620786 NEMP2A6NFY4 417 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 SNPHO15079 494 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 NRP2O60462 931 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 OR4F21O95013 312 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 TGDSO95455 350 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 TYRP14679 529 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 KHKP50053 298 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 LIMK2P53671 638 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 LCP2Q13094 533 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 TAB1Q15750 504 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 SYPL2Q5VXT5 272 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 TRABD2AQ86V40 505 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 PPM1MQ96MI6 270 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 CLCC1Q96S66 551 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 RAD9AQ99638 391 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 HMG20AQ9NP66 347 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 WRAP73Q9P2S5 460 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-219ENST00000620786 NCDNQ9UBB6 729 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 PIK3C2AO00443 1686 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 SAP18O00422 153 aaKnown RBP11.22□□□□□ -0.61
CLIP1-219ENST00000620786 SNX3O60493 162 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 NOL4O94818 638 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 SOD2P04179 222 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 FABP3P05413 133 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 CSTF2P33240 577 aaKnown RBP eCLIP11.22□□□□□ -0.61
CLIP1-219ENST00000620786 ARRB1P49407 418 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-219ENST00000620786 CLCN7P51798 805 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 SH3PXD2AQ5TCZ1 1133 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 ARMC3Q5W041 872 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 ANO7Q6IWH7 933 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 LRP10Q7Z4F1 713 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 AMIGO2Q86SJ2 522 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 BADQ92934 168 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 SLC35G5Q96KT7 338 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 TCF12Q99081 682 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 ILVBLA1L0T0 632 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 RBMXL2O75526 392 aaKnown RBP11.22□□□□□ -0.61
CLIP1-219ENST00000620786 MTHFRP42898 656 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 PYDC2Q56P42 97 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 MZT2BQ6NZ67 158 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 ZCCHC12Q6PEW1 402 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 RNF19BQ6ZMZ0 732 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 CYP2U1Q7Z449 544 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 LRRTM4Q86VH4 590 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 ZNF599Q96NL3 588 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 RTKNQ9BST9 563 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 NDC1Q9BTX1 674 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 ZSCAN5AQ9BUG6 496 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 KLHL31Q9H511 634 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 RNF121Q9H920 327 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 RASSF1Q9NS23 344 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 DYTNA2CJ06 578 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 LEFTY2O00292 366 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 SNAP91O60641 907 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 PIM1P11309 404 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-219ENST00000620786 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.22□□□□□ -0.61
CLIP1-219ENST00000620786 ANKRD22Q5VYY1 191 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 IKBIPQ70UQ0 350 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 HPS6Q86YV9 775 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 KCTD13Q8WZ19 329 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 RNF31Q96EP0 1072 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 AGAP2Q99490 1192 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 CCM2Q9BSQ5 444 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 PDCD10Q9BUL8 212 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 SPATA6Q9NWH7 488 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-219ENST00000620786 SCML2Q9UQR0 700 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 CLCA3PQ9Y6N3 262 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 U3KQV3 271 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 LMO7Q8WWI1 1683 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 RIIAD1A6NNX1 92 aa11.21□□□□□ -0.61
CLIP1-219ENST00000620786 MMP20O60882 483 aa11.21□□□□□ -0.61
CLIP1-219ENST00000620786 RB1P06400 928 aa11.21□□□□□ -0.61
CLIP1-219ENST00000620786 ATP5A1P25705 553 aaKnown RBP11.21□□□□□ -0.61
CLIP1-219ENST00000620786 CHRNA4P43681 627 aa11.21□□□□□ -0.61
CLIP1-219ENST00000620786 PCDH1Q08174 1060 aa11.21□□□□□ -0.61
CLIP1-219ENST00000620786 BRAT1Q6PJG6 821 aa11.21□□□□□ -0.61
CLIP1-219ENST00000620786 NUP54Q7Z3B4 507 aa11.21□□□□□ -0.61
CLIP1-219ENST00000620786 GPR151Q8TDV0 419 aa11.21□□□□□ -0.61
CLIP1-219ENST00000620786 DGAT2Q96PD7 388 aa11.21□□□□□ -0.61
CLIP1-219ENST00000620786 ZNF184Q99676 751 aaPredicted RBP11.21□□□□□ -0.61
CLIP1-219ENST00000620786 ADH1BP00325 375 aa11.21□□□□□ -0.61
CLIP1-219ENST00000620786 CHRNB2P17787 502 aa11.21□□□□□ -0.61
CLIP1-219ENST00000620786 NCBP2P52298 156 aaKnown RBP eCLIP11.21□□□□□ -0.61
CLIP1-219ENST00000620786 MED22Q15528 200 aa11.21□□□□□ -0.61
CLIP1-219ENST00000620786 SMU1Q2TAY7 513 aa11.21□□□□□ -0.61
CLIP1-219ENST00000620786 MREGQ8N565 214 aa11.21□□□□□ -0.61
CLIP1-219ENST00000620786 PAIP1Q9H074 479 aaKnown RBP11.21□□□□□ -0.61
CLIP1-219ENST00000620786 ZDHHC3Q9NYG2 299 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms