RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CCRL2O00421 344 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 PRMT5O14744 637 aaPredicted RBP10.67□□□□□ -0.7
UPF3A-212ENST00000619079 B4GALT5O43286 388 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 RGS10O43665 173 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 HS6ST1O60243 411 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 CDK14O94921 469 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 C1RP00736 705 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 CD36P16671 472 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 ALOX12P18054 663 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 GGT1P19440 569 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 ARNTP27540 789 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 PRIM2P49643 509 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 POLR2JP52435 117 aaKnown RBP10.67□□□□□ -0.7
UPF3A-212ENST00000619079 TPI1P60174 286 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 POU6F1Q14863 301 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 NFE2Q16621 373 aaPredicted RBP10.67□□□□□ -0.7
UPF3A-212ENST00000619079 DUSP7Q16829 419 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 PAGE3Q5JUK9 113 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 ESRP1Q6NXG1 681 aaKnown RBP10.67□□□□□ -0.7
UPF3A-212ENST00000619079 NEK5Q6P3R8 708 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 SPESP1Q6UW49 350 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 CCDC81Q6ZN84 652 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 GDPD3Q7L5L3 318 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 UBQLNLQ8IYU4 475 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 MICU2Q8IYU8 434 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 DEFB106AQ8N104 65 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 DTWD1Q8N5C7 304 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.67□□□□□ -0.7
UPF3A-212ENST00000619079 DPP10Q8N608 796 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 OR5K1Q8NHB7 308 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 GAD1Q99259 594 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 C6orf62Q9GZU0 229 aaPredicted RBP10.67□□□□□ -0.7
UPF3A-212ENST00000619079 CRISPLD2Q9H0B8 497 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 GORASP2Q9H8Y8 452 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 DPP3Q9NY33 737 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 ERVW-1Q9UQF0 538 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 A0A087WZ62 844 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 FAM234BA2RU67 622 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 MOXD2PA6NHM9 499 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 XPNPEP2O43895 674 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 NOBOXO60393 691 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 LGALS2P05162 132 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 PCNAP12004 261 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 CST5P28325 142 aaPredicted RBP10.67□□□□□ -0.7
UPF3A-212ENST00000619079 PKLRP30613 574 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 CASP2P42575 452 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 ZNF135P52742 658 aaPredicted RBP10.67□□□□□ -0.7
UPF3A-212ENST00000619079 ACLYP53396 1101 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 ZNF33AQ06730 810 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 KIAA0319Q5VV43 1072 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 GALNT7Q86SF2 657 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 HIPK1Q86Z02 1210 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 CCDC28AQ8IWP9 274 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 TP53INP2Q8IXH6 220 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 KLHDC9Q8NEP7 349 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 JPH3Q8WXH2 748 aaPredicted RBP10.67□□□□□ -0.7
UPF3A-212ENST00000619079 ISG20Q96AZ6 181 aaKnown RBP10.67□□□□□ -0.7
UPF3A-212ENST00000619079 FAM149B1Q96BN6 582 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 APOL4Q9BPW4 351 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 BRINP2Q9C0B6 783 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 NXF2Q9GZY0 626 aaKnown RBP10.67□□□□□ -0.7
UPF3A-212ENST00000619079 IRF2BPLQ9H1B7 796 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 ALG9Q9H6U8 611 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 ACOT13Q9NPJ3 140 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 STARD7Q9NQZ5 370 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 PRMT7Q9NVM4 692 aaPredicted RBP10.67□□□□□ -0.7
UPF3A-212ENST00000619079 SMPD4Q9NXE4 827 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 UBP1Q9NZI7 540 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 ZIM2Q9NZV7 527 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 CCDC59Q9P031 241 aaKnown RBP10.67□□□□□ -0.7
UPF3A-212ENST00000619079 PEX16Q9Y5Y5 336 aa10.67□□□□□ -0.7
UPF3A-212ENST00000619079 TRIP11Q15643 1979 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 IGKV6-21A0A0C4DH24 114 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 LOC110117498-PIK3R3F6TDL0 507 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 H3BRB1 525 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 CACNG3O60359 315 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 KPNA6O60684 536 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 FKBP9O95302 570 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 TSPAN8P19075 237 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 SOX11P35716 441 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 NUDT1P36639 197 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 MAP2K4P45985 399 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 PURAQ00577 322 aaKnown RBP10.66□□□□□ -0.7
UPF3A-212ENST00000619079 GALK2Q01415 458 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 BNC1Q01954 994 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 KEAP1Q14145 624 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 STARD3Q14849 445 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 TRIP4Q15650 581 aaPredicted RBP10.66□□□□□ -0.7
UPF3A-212ENST00000619079 CEP78Q5JTW2 689 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 VARS2Q5ST30 1063 aaKnown RBP10.66□□□□□ -0.7
UPF3A-212ENST00000619079 RBM20Q5T481 1227 aaKnown RBP10.66□□□□□ -0.7
UPF3A-212ENST00000619079 FAAH2Q6GMR7 532 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 SYTL1Q8IYJ3 562 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 ELMOD2Q8IZ81 293 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 PARP16Q8N5Y8 322 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 LSM14AQ8ND56 463 aaKnown RBP10.66□□□□□ -0.7
UPF3A-212ENST00000619079 FAM83FQ8NEG4 500 aaPredicted RBP10.66□□□□□ -0.7
UPF3A-212ENST00000619079 KBTBD8Q8NFY9 601 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 CNIH3Q8TBE1 160 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 SETD6Q8TBK2 473 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms