RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 TLK1Q9UKI8 766 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 PLAAQ9Y263 795 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 DNMT3AQ9Y6K1 912 aaPredicted RBP17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 BSNQ9UPA5 3926 aa17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 OR5K3A6NET4 321 aa17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 KCNN4O15554 427 aa17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 DNAJB5O75953 348 aa17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 SRP72O76094 671 aaKnown RBP17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 STK10O94804 968 aaKnown RBP17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 POLR2CP19387 275 aaPredicted RBP17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 EIF3EP60228 445 aaKnown RBP17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 PDE1BQ01064 536 aa17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 ACY1Q03154 408 aa17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 TAF1AQ15573 450 aaPredicted RBP17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 ASB18Q6ZVZ8 466 aa17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 MICALCLQ6ZW33 695 aa17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 LILRA3Q8N6C8 439 aaPredicted RBP17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 TC2NQ8N9U0 490 aa17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 OR13C4Q8NGS5 318 aa17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 ACTL9Q8TC94 416 aa17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 ZNF514Q96K75 400 aaPredicted RBP17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 RAB33BQ9H082 229 aa17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 ACTL8Q9H568 366 aa17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 SLC24A2Q9UI40 661 aa17.16■□□□□ 0.34
SHKBP1-223ENST00000600552 GSAPA4D1B5 854 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 TLCD2A6NGC4 264 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 APOC4-APOC2K7ER74 178 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 RFPL1O75677 317 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 SCRG1O75711 98 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 APOC2P02655 101 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 RALBP11234 206 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 HADHBP55084 474 aaKnown RBP17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 MLLT10P55197 1068 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 HSD11B2P80365 405 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 FOXK1P85037 733 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 KLRB1Q12918 225 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 CHAF1BQ13112 559 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 CRTC2Q53ET0 693 aaPredicted RBP17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 ANKRD20A2Q5SQ80 823 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 TMTC4Q5T4D3 741 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 ANKRD20A1Q5TYW2 823 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 ANKRD20A3Q5VUR7 823 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 C11orf63Q6NUN7 778 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 CDKL3Q8IVW4 592 aaPredicted RBP17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 OR2L2Q8NH16 312 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 CCDC110Q8TBZ0 833 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 DTX3LQ8TDB6 740 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 RMDN2Q96LZ7 410 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 FERD3LQ96RJ6 166 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 GORASP1Q9BQQ3 440 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 ACSL5Q9ULC5 683 aa17.15■□□□□ 0.34
SHKBP1-223ENST00000600552 UBR5O95071 2799 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 SPTBP11277 2137 aa17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 CCDC66A2RUB6 948 aa17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 C5orf60A6NFR6 353 aa17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 PTMAP06454 111 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 RBP3P10745 1247 aa17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 CDH3P22223 829 aa17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 CYLC1P35663 651 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 KPNA2P52292 529 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 RPS15P62841 145 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 PRKAA1Q13131 559 aa17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 UBAP2LQ14157 1087 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 PRAMEF17Q5VTA0 474 aa17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 AADACL2Q6P093 401 aa17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 TAS2R42Q7RTR8 314 aa17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 TAB3Q8N5C8 712 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 TBL1YQ9BQ87 522 aa17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 OSBPL8Q9BZF1 889 aa17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 LUC7LQ9NQ29 371 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 KCND1Q9NSA2 647 aa17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 SMOXQ9NWM0 555 aa17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 AAR2Q9Y312 384 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 COLEC10Q9Y6Z7 277 aa17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 TNRC6AQ8NDV7 1962 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-223ENST00000600552 ARGFXA6NJG6 315 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 SLC9B1P1A6NJY1 282 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 LCA5LO95447 670 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 ZBTB11O95625 1053 aaPredicted RBP17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 CRTAMO95727 393 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 TPH1P17752 444 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 ITGALP20701 1170 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 PTPN4P29074 926 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 CCL11P51671 97 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 ZRANB3Q5FWF4 1079 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 RANBP10Q6VN20 620 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 D2HGDHQ8N465 521 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 PHC3Q8NDX5 983 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 LCN9Q8WX39 176 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 CD180Q99467 661 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 NRTNQ99748 197 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 TLR10Q9BXR5 811 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 TRIM55Q9BYV6 548 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 KLHL25Q9H0H3 589 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 DUSP10Q9Y6W6 482 aa17.13■□□□□ 0.33
SHKBP1-223ENST00000600552 GOLGA6L3A6NEY3 463 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 C21orf140B9A014 251 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 CFAP99D6REC4 459 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 CPNE3O75131 537 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 ADRA1AP35348 466 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms