RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 FNBP1LQ5T0N5 605 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 CAPRIN2Q6IMN6 1127 aaKnown RBP13.29□□□□□ -0.28
TRIM28-211ENST00000597968 ARMC6Q6NXE6 501 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 HPS6Q86YV9 775 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 CDKL3Q8IVW4 592 aaPredicted RBP13.29□□□□□ -0.28
TRIM28-211ENST00000597968 KLHDC8BQ8IXV7 354 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 GPR150Q8NGU9 434 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 HM13Q8TCT9 377 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 DCUN1D1Q96GG9 259 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 MAP3K3Q99759 626 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 TRIM5Q9C035 493 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 GOLPH3Q9H4A6 298 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 ASB8Q9H765 288 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 FANCEQ9HB96 536 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 ARNT2Q9HBZ2 717 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 C1GALT1Q9NS00 363 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 KCND1Q9NSA2 647 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 IMP3Q9NV31 184 aaKnown RBP13.29□□□□□ -0.28
TRIM28-211ENST00000597968 TRIM10Q9UDY6 481 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 PCDHGB7Q9Y5F8 929 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 PCDHA3Q9Y5H8 950 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 MRPS18BQ9Y676 258 aaKnown RBP13.29□□□□□ -0.28
TRIM28-211ENST00000597968 RELNP78509 3460 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 PIPSLA2A3N6 862 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 CLEC18AA5D8T8 446 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 BTNL10A8MVZ5 291 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 H7C0C1 242 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 MAP3K7O43318 606 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 KATNA1O75449 491 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 FOLR1P15328 257 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 RBL1P28749 1068 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 PTPN4P29074 926 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 ATP5OP48047 213 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 RPA4Q13156 261 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 SEMA5AQ13591 1074 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 UBAP2LQ14157 1087 aaKnown RBP13.28□□□□□ -0.28
TRIM28-211ENST00000597968 UGT8Q16880 541 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 CCDC181Q5TID7 509 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 IZUMO3Q5VZ72 239 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 PWWP2BQ6NUJ5 590 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 ZNF449Q6P9G9 518 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 CLEC18BQ6UXF7 455 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 FAM83HQ6ZRV2 1179 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-211ENST00000597968 SNX20Q7Z614 316 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 DAAM2Q86T65 1068 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 ATCAYQ86WG3 371 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 TC2NQ8N9U0 490 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 TEX19Q8NA77 164 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 CLEC18CQ8NCF0 446 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 ACVR1CQ8NER5 493 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 C12orf66Q96MD2 445 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 INSM2Q96T92 566 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-211ENST00000597968 TWSG1Q9GZX9 223 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 ZNF71Q9NQZ8 489 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-211ENST00000597968 SLC24A2Q9UI40 661 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 PSMD13Q9UNM6 376 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 MAN2B2Q9Y2E5 1009 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 PCDHGA9Q9Y5G4 932 aaKnown RBP13.28□□□□□ -0.28
TRIM28-211ENST00000597968 PCDHA13Q9Y5I0 950 aa13.28□□□□□ -0.28
TRIM28-211ENST00000597968 SPENQ96T58 3664 aaKnown RBP13.28□□□□□ -0.28
TRIM28-211ENST00000597968 ZNF106Q9H2Y7 1883 aaKnown RBP13.27□□□□□ -0.28
TRIM28-211ENST00000597968 H7C0S8 307 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 QSOX1O00391 747 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 TJP3O95049 919 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 IPO7O95373 1038 aaKnown RBP13.27□□□□□ -0.29
TRIM28-211ENST00000597968 KLK3P07288 261 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-211ENST00000597968 RAB40ALP0C0E4 278 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 ITGALP20701 1170 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 CTNNA2P26232 953 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 XIAPP98170 497 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 COLEC12Q5KU26 742 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 ANKRD20A2Q5SQ80 823 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 ANKRD20A1Q5TYW2 823 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 ANKRD20A3Q5VUR7 823 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 OR4K2Q8NGD2 314 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 CT55Q8WUE5 264 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 ZNF501Q96CX3 271 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-211ENST00000597968 COPS8Q99627 209 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 DPH2Q9BQC3 489 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-211ENST00000597968 ACTL8Q9H568 366 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 CRLS1Q9UJA2 301 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 TP53TG5Q9Y2B4 290 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 ARL5AQ9Y689 179 aa13.27□□□□□ -0.29
TRIM28-211ENST00000597968 IGLV3-16A0A075B6K0 115 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 CDC14CA4D256 554 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 IFRD1O00458 451 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-211ENST00000597968 PJA2O43164 708 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 SCRG1O75711 98 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 TIAF1O95411 115 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 AGTP01019 485 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 NTRK1P04629 796 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 EBLN1P0CF75 366 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 RBP3P10745 1247 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 ATP1B2P14415 290 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-211ENST00000597968 RWDD2BP57060 319 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 OTUD4Q01804 1114 aaKnown RBP13.26□□□□□ -0.29
TRIM28-211ENST00000597968 SRSF1Q07955 248 aaKnown RBP eCLIP13.26□□□□□ -0.29
TRIM28-211ENST00000597968 MSLNQ13421 630 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-211ENST00000597968 KRT33BQ14525 404 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 GSE1Q14687 1217 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms