RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ZNF599Q96NL3 588 aa15.05■□□□□ -0
UPF1-204ENST00000596842 SCUBE2Q9NQ36 999 aa15.05■□□□□ -0
UPF1-204ENST00000596842 LATS2Q9NRM7 1088 aa15.05■□□□□ -0
UPF1-204ENST00000596842 COMMD8Q9NX08 183 aa15.05■□□□□ -0
UPF1-204ENST00000596842 BAG5Q9UL15 447 aa15.05■□□□□ -0
UPF1-204ENST00000596842 PCDHGA8Q9Y5G5 932 aa15.05■□□□□ -0
UPF1-204ENST00000596842 F5H5T6 163 aa15.05■□□□□ -0
UPF1-204ENST00000596842 SH3BGRLO75368 114 aa15.05■□□□□ -0
UPF1-204ENST00000596842 LRATO95237 230 aa15.05■□□□□ -0
UPF1-204ENST00000596842 ZNF682O95780 498 aa15.05■□□□□ -0
UPF1-204ENST00000596842 PKMP14618 531 aaKnown RBP15.05■□□□□ -0
UPF1-204ENST00000596842 RCVRNP35243 200 aa15.05■□□□□ -0
UPF1-204ENST00000596842 HK3P52790 923 aa15.05■□□□□ -0
UPF1-204ENST00000596842 RELAQ04206 551 aa15.05■□□□□ -0
UPF1-204ENST00000596842 SERINC3Q13530 473 aa15.05■□□□□ -0
UPF1-204ENST00000596842 DAG1Q14118 895 aa15.05■□□□□ -0
UPF1-204ENST00000596842 ZNF829Q3KNS6 432 aaPredicted RBP15.05■□□□□ -0
UPF1-204ENST00000596842 FAM171A1Q5VUB5 890 aa15.05■□□□□ -0
UPF1-204ENST00000596842 MDGA1Q8NFP4 955 aa15.05■□□□□ -0
UPF1-204ENST00000596842 FRS2Q8WU20 508 aa15.05■□□□□ -0
UPF1-204ENST00000596842 GLMNQ92990 594 aa15.05■□□□□ -0
UPF1-204ENST00000596842 BTN2A3PQ96KV6 586 aa15.05■□□□□ -0
UPF1-204ENST00000596842 CD320Q9NPF0 282 aa15.05■□□□□ -0
UPF1-204ENST00000596842 FARSBQ9NSD9 589 aaKnown RBP15.05■□□□□ -0
UPF1-204ENST00000596842 VAPAQ9P0L0 249 aa15.05■□□□□ -0
UPF1-204ENST00000596842 PTBP2Q9UKA9 531 aaKnown RBP15.05■□□□□ -0
UPF1-204ENST00000596842 PCTPQ9UKL6 214 aa15.05■□□□□ -0
UPF1-204ENST00000596842 PRKD3O94806 890 aa15.04■□□□□ -0
UPF1-204ENST00000596842 FTH1P02794 183 aa15.04■□□□□ -0
UPF1-204ENST00000596842 S100A1P23297 94 aa15.04■□□□□ -0
UPF1-204ENST00000596842 FSHRP23945 695 aa15.04■□□□□ -0
UPF1-204ENST00000596842 PIGAP37287 484 aa15.04■□□□□ -0
UPF1-204ENST00000596842 PTRHD1Q6GMV3 140 aaKnown RBP15.04■□□□□ -0
UPF1-204ENST00000596842 SPRED1Q7Z699 444 aa15.04■□□□□ -0
UPF1-204ENST00000596842 THAP5Q7Z6K1 395 aa15.04■□□□□ -0
UPF1-204ENST00000596842 KRTCAP2Q8N6L1 136 aa15.04■□□□□ -0
UPF1-204ENST00000596842 GTF3C2Q8WUA4 911 aaPredicted RBP15.04■□□□□ -0
UPF1-204ENST00000596842 ULK4Q96C45 1275 aa15.04■□□□□ -0
UPF1-204ENST00000596842 CGREF1Q99674 301 aa15.04■□□□□ -0
UPF1-204ENST00000596842 MYOCQ99972 504 aa15.04■□□□□ -0
UPF1-204ENST00000596842 NSUN3Q9H649 340 aaKnown RBP15.04■□□□□ -0
UPF1-204ENST00000596842 ATP13A1Q9HD20 1204 aa15.04■□□□□ -0
UPF1-204ENST00000596842 TMEM248Q9NWD8 314 aa15.04■□□□□ -0
UPF1-204ENST00000596842 PNMA8BQ9ULN7 279 aaPredicted RBP15.04■□□□□ -0
UPF1-204ENST00000596842 VPS4AQ9UN37 437 aa15.04■□□□□ -0
UPF1-204ENST00000596842 MATN4O95460 622 aa15.04■□□□□ -0
UPF1-204ENST00000596842 NDST3O95803 873 aa15.04■□□□□ -0
UPF1-204ENST00000596842 HOXC13P31276 330 aa15.04■□□□□ -0
UPF1-204ENST00000596842 SPATA19Q7Z5L4 167 aa15.04■□□□□ -0
UPF1-204ENST00000596842 DENND1CQ8IV53 801 aa15.04■□□□□ -0
UPF1-204ENST00000596842 OR4F6Q8NGB9 312 aa15.04■□□□□ -0
UPF1-204ENST00000596842 ARPC5LQ9BPX5 153 aa15.04■□□□□ -0
UPF1-204ENST00000596842 TM6SF2Q9BZW4 377 aa15.04■□□□□ -0
UPF1-204ENST00000596842 RAD21L1Q9H4I0 556 aa15.04■□□□□ -0
UPF1-204ENST00000596842 PKP3Q9Y446 797 aa15.04■□□□□ -0
UPF1-204ENST00000596842 PCDHB3Q9Y5E6 796 aa15.04■□□□□ -0
UPF1-204ENST00000596842 PCDHGA11Q9Y5H2 935 aa15.04■□□□□ -0
UPF1-204ENST00000596842 SEC22BO75396 215 aa15.04■□□□□ -0
UPF1-204ENST00000596842 FUCA1P04066 466 aa15.04■□□□□ -0
UPF1-204ENST00000596842 ABRAXAS2Q15018 415 aa15.04■□□□□ -0
UPF1-204ENST00000596842 SLC14A2Q15849 920 aa15.04■□□□□ -0
UPF1-204ENST00000596842 LDLRAD1Q5T700 205 aa15.04■□□□□ -0
UPF1-204ENST00000596842 Q6ZSR9 355 aa15.04■□□□□ -0
UPF1-204ENST00000596842 LRRC49Q8IUZ0 686 aa15.04■□□□□ -0
UPF1-204ENST00000596842 CCDC117Q8IWD4 279 aaPredicted RBP15.04■□□□□ -0
UPF1-204ENST00000596842 CNIH3Q8TBE1 160 aa15.04■□□□□ -0
UPF1-204ENST00000596842 DUS3LQ96G46 650 aaKnown RBP15.04■□□□□ -0
UPF1-204ENST00000596842 ZBTB18Q99592 522 aa15.04■□□□□ -0
UPF1-204ENST00000596842 IPPKQ9H8X2 491 aa15.04■□□□□ -0
UPF1-204ENST00000596842 SMPD4Q9NXE4 827 aa15.04■□□□□ -0
UPF1-204ENST00000596842 LOC285095A0A1B0GVY8 99 aa15.03■□□□□ -0
UPF1-204ENST00000596842 TCRBV5S2A0A599 114 aa15.03■□□□□ -0
UPF1-204ENST00000596842 UPK3BL1B0FP48 263 aa15.03■□□□□ -0
UPF1-204ENST00000596842 UPK3BL2E5RIL1 263 aa15.03■□□□□ -0
UPF1-204ENST00000596842 PSMD11O00231 422 aa15.03■□□□□ -0
UPF1-204ENST00000596842 MLYCDO95822 493 aa15.03■□□□□ -0
UPF1-204ENST00000596842 EFNA1P20827 205 aaPredicted RBP15.03■□□□□ -0
UPF1-204ENST00000596842 TCEA1P23193 301 aaKnown RBP15.03■□□□□ -0
UPF1-204ENST00000596842 HLCSP50747 726 aa15.03■□□□□ -0
UPF1-204ENST00000596842 OCA2Q04671 838 aa15.03■□□□□ -0
UPF1-204ENST00000596842 IL10RBQ08334 325 aa15.03■□□□□ -0
UPF1-204ENST00000596842 MAPKAPK3Q16644 382 aa15.03■□□□□ -0
UPF1-204ENST00000596842 Q6ZNX1 250 aa15.03■□□□□ -0
UPF1-204ENST00000596842 SLC22A15Q8IZD6 547 aa15.03■□□□□ -0
UPF1-204ENST00000596842 GPR63Q9BZJ6 419 aa15.03■□□□□ -0
UPF1-204ENST00000596842 RIBC2Q9H4K1 309 aa15.03■□□□□ -0
UPF1-204ENST00000596842 ZFP37Q9Y6Q3 630 aaPredicted RBP15.03■□□□□ -0
UPF1-204ENST00000596842 OTOFQ9HC10 1997 aa15.03■□□□□ -0
UPF1-204ENST00000596842 LCHNA4D1U4 455 aa15.03■□□□□ -0
UPF1-204ENST00000596842 HAS3O00219 553 aa15.03■□□□□ -0
UPF1-204ENST00000596842 INMTO95050 263 aa15.03■□□□□ -0
UPF1-204ENST00000596842 B3GALT4O96024 378 aa15.03■□□□□ -0
UPF1-204ENST00000596842 PLA2G16P53816 162 aa15.03■□□□□ -0
UPF1-204ENST00000596842 NFKB2Q00653 900 aa15.03■□□□□ -0
UPF1-204ENST00000596842 KCNAB2Q13303 367 aa15.03■□□□□ -0
UPF1-204ENST00000596842 RGS21Q2M5E4 152 aa15.03■□□□□ -0
UPF1-204ENST00000596842 GLB1LQ6UWU2 654 aa15.03■□□□□ -0
UPF1-204ENST00000596842 FAM151BQ6UXP7 276 aa15.03■□□□□ -0
UPF1-204ENST00000596842 DET1Q7L5Y6 550 aa15.03■□□□□ -0
UPF1-204ENST00000596842 OMA1Q96E52 524 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms