RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 COLEC10Q9Y6Z7 277 aa14.93□□□□□ -0.02
TRIM28-203ENST00000593582 CCDC78A2IDD5 438 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 CEP104O60308 925 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 PRSS56P0CW18 603 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 PSMA3P25788 255 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 SEPHS1P49903 392 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 FOXM1Q08050 763 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 SRSF6Q13247 344 aaKnown RBP14.92□□□□□ -0.02
TRIM28-203ENST00000593582 CACHD1Q5VU97 1274 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 KIAA1614Q5VZ46 1190 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 ZNF449Q6P9G9 518 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 C4orf22Q6V702 233 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 FAM92BQ6ZTR7 304 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 PRSS42Q7Z5A4 293 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 PRUNE1Q86TP1 453 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 PIANPQ8IYJ0 282 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 SPDYE1Q8NFV5 336 aaPredicted RBP14.92□□□□□ -0.02
TRIM28-203ENST00000593582 NKD1Q969G9 470 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.92□□□□□ -0.02
TRIM28-203ENST00000593582 WBP1Q96G27 269 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 HOMER3Q9NSC5 361 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 SMARCAL1Q9NZC9 954 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 PILRAQ9UKJ1 303 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 DRG1Q9Y295 367 aaKnown RBP14.92□□□□□ -0.02
TRIM28-203ENST00000593582 HEBP2Q9Y5Z4 205 aa14.92□□□□□ -0.02
TRIM28-203ENST00000593582 IFRD1O00458 451 aaPredicted RBP14.91□□□□□ -0.02
TRIM28-203ENST00000593582 KIF1CO43896 1103 aaKnown RBP14.91□□□□□ -0.02
TRIM28-203ENST00000593582 AP2A2O94973 939 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 GSTM1P09488 218 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 ZSCAN5DPP0CG00 497 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 ADRA1DP25100 572 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 NDUFS1P28331 727 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 CXCR5P32302 372 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 RPL22P35268 128 aaKnown RBP14.91□□□□□ -0.02
TRIM28-203ENST00000593582 GRIA1P42261 906 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 NSG1P42857 185 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 GSTM4Q03013 218 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 DBN1Q16643 649 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 CAPRIN2Q6IMN6 1127 aaKnown RBP14.91□□□□□ -0.02
TRIM28-203ENST00000593582 XKR5Q6UX68 686 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 NLRP9Q7RTR0 991 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 CACNA2D3Q8IZS8 1091 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 LILRA3Q8N6C8 439 aaPredicted RBP14.91□□□□□ -0.02
TRIM28-203ENST00000593582 CLDN19Q8N6F1 224 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 GLIS1Q8NBF1 620 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 RMDN2Q96LZ7 410 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 RANBP9Q96S59 729 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 TTC1Q99614 292 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 KIR3DX1Q9H7L2 352 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 COG4Q9H9E3 785 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 APMAPQ9HDC9 416 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 CASS4Q9NQ75 786 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 SIDT1Q9NXL6 827 aaKnown RBP14.91□□□□□ -0.02
TRIM28-203ENST00000593582 RIMKLBQ9ULI2 386 aa14.91□□□□□ -0.02
TRIM28-203ENST00000593582 CCDC162PA2VCL2 907 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 OR5K3A6NET4 321 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 OR51F1A6NGY5 319 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 QSOX1O00391 747 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 RAD1O60671 282 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 MAP4P27816 1152 aaKnown RBP14.9□□□□□ -0.02
TRIM28-203ENST00000593582 RPA4Q13156 261 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 ITIH4Q14624 930 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 IL11RAQ14626 422 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 DNTTIP2Q5QJE6 756 aaKnown RBP14.9□□□□□ -0.02
TRIM28-203ENST00000593582 TSTD2Q5T7W7 516 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 LYPLAL1Q5VWZ2 237 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 ARMC6Q6NXE6 501 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 DUS1LQ6P1R4 473 aaKnown RBP14.9□□□□□ -0.02
TRIM28-203ENST00000593582 CYB5D1Q6P9G0 228 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 AFTPHQ6ULP2 937 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 PCSK4Q6UW60 755 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 MICALCLQ6ZW33 695 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 OOSP2Q86WS3 158 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 NLGN4XQ8N0W4 816 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 NLGN4YQ8NFZ3 816 aaPredicted RBP14.9□□□□□ -0.02
TRIM28-203ENST00000593582 OR13J1Q8NGT2 312 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 KLHL6Q8WZ60 621 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 UBXN4Q92575 508 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 TTC9Q92623 222 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 HDAC10Q969S8 669 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 OR6C1Q96RD1 312 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 GRPEL1Q9HAV7 217 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 HRASLS2Q9NWW9 162 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 SLC24A2Q9UI40 661 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 JRKLQ9Y4A0 524 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 PCDHGA4Q9Y5G9 962 aa14.9□□□□□ -0.02
TRIM28-203ENST00000593582 ATRXP46100 2492 aa14.89□□□□□ -0.03
TRIM28-203ENST00000593582 F8W8V4 182 aa14.89□□□□□ -0.03
TRIM28-203ENST00000593582 AP3B1O00203 1094 aa14.89□□□□□ -0.03
TRIM28-203ENST00000593582 STK17BO94768 372 aa14.89□□□□□ -0.03
TRIM28-203ENST00000593582 NELFEP18615 380 aaKnown RBP14.89□□□□□ -0.03
TRIM28-203ENST00000593582 FOXN2P32314 431 aa14.89□□□□□ -0.03
TRIM28-203ENST00000593582 KCNJ1P48048 391 aa14.89□□□□□ -0.03
TRIM28-203ENST00000593582 CD151P48509 253 aa14.89□□□□□ -0.03
TRIM28-203ENST00000593582 PPP1CAP62136 330 aa14.89□□□□□ -0.03
TRIM28-203ENST00000593582 SH3BP2P78314 561 aa14.89□□□□□ -0.03
TRIM28-203ENST00000593582 BASP1P80723 227 aaKnown RBP14.89□□□□□ -0.03
TRIM28-203ENST00000593582 PACS1Q6VY07 963 aa14.89□□□□□ -0.03
TRIM28-203ENST00000593582 CERS6Q6ZMG9 384 aa14.89□□□□□ -0.03
TRIM28-203ENST00000593582 PPHLN1Q8NEY8 458 aaKnown RBP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms