RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 FOSL1P15407 271 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 HLA-FP30511 346 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 CPA2P48052 419 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 NIPAL4Q0D2K0 466 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 BST1Q10588 318 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 OLIG2Q13516 323 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 PPM1JQ5JR12 505 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 TJAP1Q5JTD0 557 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 TMEM164Q5U3C3 297 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 RABEPKQ7Z6M1 372 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 SLC9B2Q86UD5 537 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 EXOC3L1Q86VI1 746 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 CLDN19Q8N6F1 224 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 FAM120BQ96EK7 910 aaKnown RBP9.69□□□□□ -0.86
LIG3-216ENST00000593099 TRIM39Q9HCM9 518 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 PEX11AO75192 247 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 SLC35G6P0C7Q6 338 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 PNLIPRP1P54315 467 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 CYP4F2P78329 520 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 FOXM1Q08050 763 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 FASTKQ14296 549 aaKnown RBP9.69□□□□□ -0.86
LIG3-216ENST00000593099 ARMC3Q5W041 872 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 ADGRG2Q8IZP9 1017 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 AGGF1Q8N302 714 aaeCLIP9.69□□□□□ -0.86
LIG3-216ENST00000593099 WDR60Q8WVS4 1066 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 SCRN2Q96FV2 425 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 MGME1Q9BQP7 344 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 NDUFAF1Q9Y375 327 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 CCT8L1PA6NM43 557 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 ITGB8P26012 769 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 PAQR3Q6TCH7 311 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 SCIMPQ6UWF3 145 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 C10orf107Q8IVU9 208 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 DNASE1L2Q92874 299 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 MIPEPQ99797 713 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 RAD21L1Q9H4I0 556 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 PCDH10Q9P2E7 1040 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 ACSL5Q9ULC5 683 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 PTPRZ1P23471 2315 aaPredicted RBP9.69□□□□□ -0.86
LIG3-216ENST00000593099 TMEM265A0A087WTH1 108 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 SMAD6O43541 496 aaKnown RBP9.68□□□□□ -0.86
LIG3-216ENST00000593099 CLDN9O95484 217 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 GNAZP19086 355 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 ALAS2P22557 587 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 CTHP32929 405 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 NUDT1P36639 197 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 CTSOP43234 321 aaPredicted RBP9.68□□□□□ -0.86
LIG3-216ENST00000593099 PXNP49023 591 aaPredicted RBP9.68□□□□□ -0.86
LIG3-216ENST00000593099 INPP1P49441 399 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 STC1P52823 247 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 AP1S2P56377 157 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 CSTF1Q05048 431 aaKnown RBP9.68□□□□□ -0.86
LIG3-216ENST00000593099 HYAL1Q12794 435 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 HSF5Q4G112 596 aaPredicted RBP9.68□□□□□ -0.86
LIG3-216ENST00000593099 EGFLAMQ63HQ2 1017 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 ZDHHC24Q6UX98 284 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 RGS9BPQ6ZS82 235 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 TP53INP2Q8IXH6 220 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 IQCKQ8N0W5 287 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 ARMC7Q9H6L4 198 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 IPPKQ9H8X2 491 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 KLHL28Q9NXS3 571 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 STMN3Q9NZ72 180 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 PLLPQ9Y342 182 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 HDAC3O15379 428 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 FFAR2O15552 330 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 VEGFDO43915 354 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 CACNG3O60359 315 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 KLKB1P03952 638 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 TCN1P20061 433 aaPredicted RBP9.68□□□□□ -0.86
LIG3-216ENST00000593099 ITGB7P26010 798 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 CHIT1Q13231 466 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 GRIN2CQ14957 1233 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 MED27Q6P2C8 311 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 DSELQ8IZU8 1212 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 GJD3Q8N144 294 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 OR2T34Q8NGX1 318 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 CKAP2Q8WWK9 683 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 CCDC138Q96M89 665 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 MYADMQ96S97 322 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 BTRCQ9Y297 605 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 OR5K4A6NMS3 321 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 GFRA2O00451 464 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 CBSLP0DN79 551 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 CBSP35520 551 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 AP2B1P63010 937 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 RPL38P63173 70 aaKnown RBP9.68□□□□□ -0.86
LIG3-216ENST00000593099 NFATC2Q13469 925 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 ZNHIT3Q15649 155 aaPredicted RBP9.68□□□□□ -0.86
LIG3-216ENST00000593099 NADSYN1Q6IA69 706 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 TDRPQ86YL5 185 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 ZNF276Q8N554 614 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 CLIP3Q96DZ5 547 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 TFB2MQ9H5Q4 396 aaKnown RBP9.68□□□□□ -0.86
LIG3-216ENST00000593099 KCNK12Q9HB15 430 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 FETUBQ9UGM5 382 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 PCDHGA3Q9Y5H0 932 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 TRIOBPQ9H2D6 2365 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 CCDC154A6NI56 674 aa9.68□□□□□ -0.86
LIG3-216ENST00000593099 TRAFD1O14545 582 aaPredicted RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms