RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 A0A087WUV0 522 aaPredicted RBP3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 CTAGE15A4D2H0 777 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 B4E171 279 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 FAM72CH0Y354 149 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 IFIT3O14879 490 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 SHOX2O60902 331 aaPredicted RBP3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 TBX18O95935 607 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 CTAGE8P0CG41 777 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 CDH1P12830 882 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 EDN2P20800 178 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 ADORA1P30542 326 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 CASP14P31944 242 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 CDKN1AP38936 164 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 TSPAN7P41732 249 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 NAP1L1P55209 391 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 MTF1Q14872 753 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 MMEL1Q495T6 779 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 CTXN3Q4LDR2 81 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 PPP6R3Q5H9R7 873 aaPredicted RBP3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 FBXO47Q5MNV8 452 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 LCE3CQ5T5A8 94 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 FAM72AQ5TYM5 149 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 IRAK1BP1Q5VVH5 260 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 PLEKHA7Q6IQ23 1121 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 FAM72DQ6L9T8 149 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 LRRC8EQ6NSJ5 796 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 FAM122CQ6P4D5 195 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 LRRC31Q6UY01 552 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 FASTKD5Q7L8L6 764 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 TBC1D26Q86UD7 250 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 CTAGE6Q86UF2 777 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 FAM72BQ86X60 149 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 C2CD5Q86YS7 1000 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 TBC1D10CQ8IV04 446 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 CTAGE4Q8IX94 777 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 DIS3L2Q8IYB7 885 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 SLC35F6Q8N357 371 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 CPXM2Q8N436 756 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 CCDC148Q8NFR7 591 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 DMBX1Q8NFW5 382 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 OR8K1Q8NGG5 319 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 CNOT9Q92600 299 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 SDCCAG3Q96C92 435 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 ZC3HAV1LQ96H79 300 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 BARD1Q99728 777 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 CENPOQ9BU64 300 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 FAM107BQ9H098 131 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 RSPH9Q9H1X1 276 aaPredicted RBP3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 STN1Q9H668 368 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 GGA3Q9NZ52 723 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 RWDD2AQ9UIY3 292 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 RRP15Q9Y3B9 282 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 TTLL3Q9Y4R7 772 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 NUP188Q5SRE5 1749 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 PKD1L3Q7Z443 1732 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 BCL9LQ86UU0 1499 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 GLI3P10071 1580 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 ALS2Q96Q42 1657 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 RGPD5Q99666 1765 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 ZNF532Q9HCE3 1301 aa3.96□□□□□ -1.77
SMCHD1-208ENST00000583344 TJP1Q07157 1748 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 AKAP11Q9UKA4 1901 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 A0A1B0GU03 582 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 C17orf113A0A1B0GUU1 675 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 ARHGAP10A1A4S6 786 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 PABPN1LA6NDY0 278 aaKnown RBP3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 LRRIQ3A6PVS8 624 aaPredicted RBP3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 B9A039 149 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 PER2O15055 1255 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 KLK8O60259 260 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 TMCC2O75069 709 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 GYPCP04921 128 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 WEE2P0C1S8 567 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 PCP11498 1178 aaKnown RBP3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 LMAN1P49257 510 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 NT5C2P49902 561 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 PAPOLAP51003 745 aaKnown RBP3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 CLNS1AP54105 237 aaKnown RBP3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 CLDN2P57739 230 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 ACTR2P61160 394 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 VSNL1P62760 191 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 KRT83P78385 493 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 WTAPQ15007 396 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 KARSQ15046 597 aaKnown RBP3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 MEA1Q16626 185 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 HSP90B2PQ58FF3 399 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 HSP90AB3PQ58FF7 597 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 TCP11X2Q5H9J9 407 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 WDR45BQ5MNZ6 344 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 ZNF658Q5TYW1 1059 aaPredicted RBP3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 C17orf99Q6UX52 265 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 MFSD6Q6ZSS7 791 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 KRT77Q7Z794 578 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 RPAINQ86UA6 219 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 CCDC170Q8IYT3 715 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 MMGT1Q8N4V1 131 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 ZNF485Q8NCK3 441 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 CEP70Q8NHQ1 597 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 NOC3LQ8WTT2 800 aaKnown RBP3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 SNAPC3Q92966 411 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms