RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 LINC00615Q96LM1 132 aaPredicted RBP19.07■□□□□ 0.64
SS18-209ENST00000578595 RMDN2Q96LZ7 410 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 INSM2Q96T92 566 aaPredicted RBP19.07■□□□□ 0.64
SS18-209ENST00000578595 EPB41L1Q9H4G0 881 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 SLC40A1Q9NP59 571 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 SOX13Q9UN79 622 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 MAD1L1Q9Y6D9 718 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 ASPMQ8IZT6 3477 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 ADAMTS20P59510 1910 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 UBA6A0AVT1 1052 aaPredicted RBP19.06■□□□□ 0.64
SS18-209ENST00000578595 GOLGA8KD6RF30 607 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 GOLGA8TH3BQL2 631 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 ITGA2BP08514 1039 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 THRAP10827 490 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 MAGEA6P43360 314 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 CSE1LP55060 971 aaKnown RBP19.06■□□□□ 0.64
SS18-209ENST00000578595 DR1Q01658 176 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 PTK6Q13882 451 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 SEMA3AQ14563 771 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 IZUMO3Q5VZ72 239 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 IRGCQ6NXR0 463 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 PLXDC1Q8IUK5 500 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 MPP5Q8N3R9 675 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 TMEM159Q96B96 161 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 RUNDC3BQ96NL0 473 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 SERPINB12Q96P63 405 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 TGM7Q96PF1 710 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 TSSK1BQ9BXA7 367 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 MRM3Q9HC36 420 aaKnown RBP19.06■□□□□ 0.64
SS18-209ENST00000578595 ASCL3Q9NQ33 180 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 TREX1Q9NSU2 369 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 MARCH4Q9P2E8 410 aaPredicted RBP19.06■□□□□ 0.64
SS18-209ENST00000578595 NEU2Q9Y3R4 380 aa19.06■□□□□ 0.64
SS18-209ENST00000578595 C17orf113A0A1B0GUU1 675 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 CCDC188H7C350 402 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 HGSO14964 777 aaPredicted RBP19.05■□□□□ 0.64
SS18-209ENST00000578595 NDUFS3O75489 264 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 RASSF9O75901 435 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 MLNP12872 115 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 TTPAP49638 278 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 GFERP55789 205 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 ERVPABLB-1P60509 514 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 CFHR1Q03591 330 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 TRA2AQ13595 282 aaKnown RBP eCLIP19.05■□□□□ 0.64
SS18-209ENST00000578595 PTRHD1Q6GMV3 140 aaKnown RBP19.05■□□□□ 0.64
SS18-209ENST00000578595 WDR74Q6RFH5 385 aaPredicted RBP19.05■□□□□ 0.64
SS18-209ENST00000578595 SYT10Q6XYQ8 523 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 CAND1Q86VP6 1230 aaKnown RBP19.05■□□□□ 0.64
SS18-209ENST00000578595 AGBL5Q8NDL9 886 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 MCUQ8NE86 351 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 HNRNPLLQ8WVV9 542 aaKnown RBP19.05■□□□□ 0.64
SS18-209ENST00000578595 RSC1A1Q92681 617 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 SLC46A1Q96NT5 459 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 FERD3LQ96RJ6 166 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 KIFC1Q9BW19 673 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 UCK1Q9HA47 277 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 PCYOX1Q9UHG3 505 aa19.05■□□□□ 0.64
SS18-209ENST00000578595 FREM2Q5SZK8 3169 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 SDR42E2A6NKP2 422 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 DNALI1O14645 258 aaPredicted RBP19.04■□□□□ 0.64
SS18-209ENST00000578595 PFDN6O15212 129 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 DXOO77932 396 aaKnown RBP19.04■□□□□ 0.64
SS18-209ENST00000578595 ETV5P41161 510 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 CAPZBP47756 277 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 DHX34Q14147 1143 aaKnown RBP19.04■□□□□ 0.64
SS18-209ENST00000578595 MRNIPQ6NTE8 343 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 ARMC6Q6NXE6 501 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 KLHL35Q6PF15 583 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 C19orf48Q6RUI8 117 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 NAPRTQ6XQN6 538 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 SDCCAG8Q86SQ7 713 aaPredicted RBP19.04■□□□□ 0.64
SS18-209ENST00000578595 ZNF248Q8NDW4 579 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 SNIP1Q8TAD8 396 aaKnown RBP19.04■□□□□ 0.64
SS18-209ENST00000578595 KCNE4Q8WWG9 221 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 PRR11Q96HE9 360 aaPredicted RBP19.04■□□□□ 0.64
SS18-209ENST00000578595 TRIM56Q9BRZ2 755 aaKnown RBP19.04■□□□□ 0.64
SS18-209ENST00000578595 TRIM51Q9BSJ1 452 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 TRIM31Q9BZY9 425 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.04■□□□□ 0.64
SS18-209ENST00000578595 HEBP2Q9Y5Z4 205 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 RPS6KL1Q9Y6S9 549 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 COLEC10Q9Y6Z7 277 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 DMXL2Q8TDJ6 3036 aa19.04■□□□□ 0.64
SS18-209ENST00000578595 SDK2Q58EX2 2172 aa19.03■□□□□ 0.64
SS18-209ENST00000578595 EFCAB7A8K855 629 aa19.03■□□□□ 0.64
SS18-209ENST00000578595 LIN7AO14910 233 aaPredicted RBP19.03■□□□□ 0.64
SS18-209ENST00000578595 FANCGO15287 622 aa19.03■□□□□ 0.64
SS18-209ENST00000578595 CAPN5O15484 640 aaPredicted RBP19.03■□□□□ 0.64
SS18-209ENST00000578595 GSTM1P09488 218 aa19.03■□□□□ 0.64
SS18-209ENST00000578595 CCL4P13236 92 aa19.03■□□□□ 0.64
SS18-209ENST00000578595 PDHA2P29803 388 aa19.03■□□□□ 0.64
SS18-209ENST00000578595 MLLT3P42568 568 aaPredicted RBP19.03■□□□□ 0.64
SS18-209ENST00000578595 ABCG1P45844 678 aa19.03■□□□□ 0.64
SS18-209ENST00000578595 EIF3BP55884 814 aaKnown RBP19.03■□□□□ 0.64
SS18-209ENST00000578595 GSTM4Q03013 218 aa19.03■□□□□ 0.64
SS18-209ENST00000578595 SQSTM1Q13501 440 aa19.03■□□□□ 0.64
SS18-209ENST00000578595 RNASEH2BQ5TBB1 312 aaKnown RBP19.03■□□□□ 0.64
SS18-209ENST00000578595 TMEM164Q5U3C3 297 aa19.03■□□□□ 0.64
SS18-209ENST00000578595 KIAA0930Q6ICG6 404 aaPredicted RBP19.03■□□□□ 0.64
SS18-209ENST00000578595 FAM92BQ6ZTR7 304 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms