RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CPXM2Q8N436 756 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 DPP10Q8N608 796 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 TTC16Q8NEE8 873 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 KCTD14Q9BQ13 255 aaPredicted RBP9.92□□□□□ -0.82
VPS53-220ENST00000576149 TMEM79Q9BSE2 394 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 C17orf80Q9BSJ5 609 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 TRIM4Q9C037 500 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 ATP13A3Q9H7F0 1226 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 NANOGQ9H9S0 305 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 ABCB8Q9NUT2 735 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 SPG21Q9NZD8 308 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 OGDHLQ9ULD0 1010 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 MAFFQ9ULX9 164 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 GLYATL1P3A0A0U1RQE8 302 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 TCRBV5S2A0A599 114 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 TRIM16O95361 564 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 ENO2P09104 434 aaPredicted RBP9.92□□□□□ -0.82
VPS53-220ENST00000576149 CNPP09543 421 aaKnown RBP9.92□□□□□ -0.82
VPS53-220ENST00000576149 FASP25445 335 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 GABRR2P28476 465 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 CASP2P42575 452 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 HSPA7P48741 367 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 CYP4F8P98187 520 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 TLE2Q04725 743 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 ABRAXAS2Q15018 415 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 CHRNA6Q15825 494 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 FXNQ16595 210 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 FUT11Q495W5 492 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 GPR33Q49SQ1 333 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 NADK2Q4G0N4 442 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 GRAMD4Q6IC98 578 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 MACC1Q6ZN28 852 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 GAREM2Q75VX8 874 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 MILR1Q7Z6M3 343 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 TMCO2Q7Z6W1 182 aaPredicted RBP9.92□□□□□ -0.82
VPS53-220ENST00000576149 METTL3Q86U44 580 aaKnown RBP9.92□□□□□ -0.82
VPS53-220ENST00000576149 IFNEQ86WN2 208 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 ZSWIM9Q86XI8 627 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 BBS7Q8IWZ6 715 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 CBARPQ8N350 705 aaPredicted RBP9.92□□□□□ -0.82
VPS53-220ENST00000576149 ZBTB2Q8N680 514 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 TRPV3Q8NET8 790 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 FIBINQ8TAL6 211 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 ISG20Q96AZ6 181 aaKnown RBP9.92□□□□□ -0.82
VPS53-220ENST00000576149 DGCR14Q96DF8 476 aaKnown RBP9.92□□□□□ -0.82
VPS53-220ENST00000576149 TMEM74Q96NL1 305 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 HBEGFQ99075 208 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 ANKRD60Q9BZ19 345 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 TNKS2Q9H2K2 1166 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 ACTL8Q9H568 366 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 RC3H2Q9HBD1 1191 aaKnown RBP9.92□□□□□ -0.82
VPS53-220ENST00000576149 INTS7Q9NVH2 962 aaKnown RBP9.92□□□□□ -0.82
VPS53-220ENST00000576149 CRLS1Q9UJA2 301 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 ZNF510Q9Y2H8 683 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 CCL27Q9Y4X3 112 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 ARHGAP10A1A4S6 786 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 SAC3D1A6NKF1 404 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 ARNTLO00327 626 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 ANKRD28O15084 1053 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 INPP4BO15327 924 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 TEX28O15482 410 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 KATNA1O75449 491 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 GUCA1CO95843 209 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 IGSF6O95976 241 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 SPATA31D3P0C874 917 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 G6PDP11413 515 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 MTHFD1P11586 935 aaKnown RBP9.91□□□□□ -0.82
VPS53-220ENST00000576149 ATP6V1B1P15313 513 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 MSH3P20585 1137 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 CD70P32970 193 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 SPAM1P38567 509 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 SLC7A9P82251 487 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 NR6A1Q15406 480 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 CYP51A1Q16850 503 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 SLC5A9Q2M3M2 681 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 AP5B1Q2VPB7 878 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 MPPE1Q53F39 396 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 DGKKQ5KSL6 1271 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 FAM117BQ6P1L5 589 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 SLC2A7Q6PXP3 512 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 CYP20A1Q6UW02 462 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 PRR23BQ6ZRT6 265 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 SPATA31D4Q6ZUB0 917 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 EPHX4Q8IUS5 362 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 HID1Q8IV36 788 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 CMTR2Q8IYT2 770 aaKnown RBP9.91□□□□□ -0.82
VPS53-220ENST00000576149 PAF1Q8N7H5 531 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 MFSD2AQ8NA29 543 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 PAPD5Q8NDF8 572 aaKnown RBP9.91□□□□□ -0.82
VPS53-220ENST00000576149 TFAP2CQ92754 450 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 VOPP1Q96AW1 172 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 CENPNQ96H22 339 aaPredicted RBP9.91□□□□□ -0.82
VPS53-220ENST00000576149 TOX2Q96NM4 488 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 LYSMD1Q96S90 227 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 HTATIP2Q9BUP3 242 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 CFAP97Q9P2B7 532 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 INTS6Q9UL03 887 aaKnown RBP9.91□□□□□ -0.82
VPS53-220ENST00000576149 TRIM17Q9Y577 477 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 KANSL1LA0AUZ9 987 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 AGAP14A8MT82 685 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms