RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PMP22Q01453 160 aa15.66■□□□□ 0.1
VPS53-218ENST00000575207 TDRD12Q587J7 1177 aaKnown RBP15.66■□□□□ 0.1
VPS53-218ENST00000575207 C1orf189Q5VU69 101 aa15.66■□□□□ 0.1
VPS53-218ENST00000575207 OOSP2Q86WS3 158 aa15.66■□□□□ 0.1
VPS53-218ENST00000575207 PSMF1Q92530 271 aa15.66■□□□□ 0.1
VPS53-218ENST00000575207 CATSPERBQ9H7T0 1116 aa15.66■□□□□ 0.1
VPS53-218ENST00000575207 SEPT11Q9NVA2 429 aaKnown RBP15.66■□□□□ 0.1
VPS53-218ENST00000575207 MRPS2Q9Y399 296 aaKnown RBP15.66■□□□□ 0.1
VPS53-218ENST00000575207 TTC24A2A3L6 582 aaPredicted RBP15.65■□□□□ 0.1
VPS53-218ENST00000575207 H7C1Q1 480 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 KMOO15229 486 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 PGLSO95336 258 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 MLYCDO95822 493 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 TSPAN12O95859 305 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 ABOP16442 354 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 CTPS1P17812 591 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 USP8P40818 1118 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 TRAF2Q12933 501 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 KEAP1Q14145 624 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 CDO1Q16878 200 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 FOXD4L6Q3SYB3 417 aaPredicted RBP15.65■□□□□ 0.1
VPS53-218ENST00000575207 HENMT1Q5T8I9 393 aaKnown RBP15.65■□□□□ 0.1
VPS53-218ENST00000575207 CRTC3Q6UUV7 619 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 FOXD4L3Q6VB84 417 aaPredicted RBP15.65■□□□□ 0.1
VPS53-218ENST00000575207 CHERPQ8IWX8 916 aaKnown RBP15.65■□□□□ 0.1
VPS53-218ENST00000575207 CCDC185Q8N715 623 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 OR11G2Q8NGC1 345 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 ZFPM2Q8WW38 1151 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 PIH1D2Q8WWB5 315 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 C18orf8Q96DM3 657 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 ZNF396Q96N95 335 aaPredicted RBP15.65■□□□□ 0.1
VPS53-218ENST00000575207 TSG101Q99816 390 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 OR2AG1Q9H205 316 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 PCDHA7Q9UN72 937 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 AP1M2Q9Y6Q5 423 aa15.65■□□□□ 0.1
VPS53-218ENST00000575207 H3BMH7 237 aa15.64■□□□□ 0.09
VPS53-218ENST00000575207 USP1O94782 785 aa15.64■□□□□ 0.09
VPS53-218ENST00000575207 PRAMEF1O95521 474 aa15.64■□□□□ 0.09
VPS53-218ENST00000575207 KRT9P35527 623 aa15.64■□□□□ 0.09
VPS53-218ENST00000575207 PAPOLAP51003 745 aaKnown RBP15.64■□□□□ 0.09
VPS53-218ENST00000575207 RUNX1T1Q06455 604 aa15.64■□□□□ 0.09
VPS53-218ENST00000575207 SLC9A5Q14940 896 aa15.64■□□□□ 0.09
VPS53-218ENST00000575207 NKAIN1Q4KMZ8 207 aa15.64■□□□□ 0.09
VPS53-218ENST00000575207 SMYD4Q8IYR2 804 aaPredicted RBP15.64■□□□□ 0.09
VPS53-218ENST00000575207 PYROXD2Q8N2H3 581 aa15.64■□□□□ 0.09
VPS53-218ENST00000575207 HDAC10Q969S8 669 aa15.64■□□□□ 0.09
VPS53-218ENST00000575207 NTAN1Q96AB6 310 aa15.64■□□□□ 0.09
VPS53-218ENST00000575207 RNF32Q9H0A6 362 aa15.64■□□□□ 0.09
VPS53-218ENST00000575207 MRM3Q9HC36 420 aaKnown RBP15.64■□□□□ 0.09
VPS53-218ENST00000575207 MTMR6Q9Y217 621 aa15.64■□□□□ 0.09
VPS53-218ENST00000575207 GOLGA8SH3BPF8 625 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 PRRG2O14669 202 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 MYBL2P10244 700 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 IL4RP24394 825 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 HALP42357 657 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 ME1P48163 572 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 EPHB1P54762 984 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 C15orf59Q2T9L4 293 aaPredicted RBP15.63■□□□□ 0.09
VPS53-218ENST00000575207 ARMC6Q6NXE6 501 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 ENOSF1Q7L5Y1 443 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 C11orf96Q7Z7L8 435 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 ZNF547Q8IVP9 402 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 ZZZ3Q8IYH5 903 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 GPR135Q8IZ08 494 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 MARVELD2Q8N4S9 558 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 SUN3Q8TAQ9 357 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 VPS50Q96JG6 964 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 SLC39A8Q9C0K1 460 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 TRIM39Q9HCM9 518 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 SLC22A11Q9NSA0 550 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 KIAA1468Q9P260 1216 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 PTGFRNQ9P2B2 879 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 TRIM10Q9UDY6 481 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 POMT2Q9UKY4 750 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 RNF6Q9Y252 685 aa15.63■□□□□ 0.09
VPS53-218ENST00000575207 NOTCH1P46531 2555 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 ARHGAP42A6NI28 874 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 KCNAB3O43448 404 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 F10P00742 488 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 IFNA2P01563 188 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 CDH3P22223 829 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 SYCP1Q15431 976 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 CCDC14Q49A88 953 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 ARMC12Q5T9G4 340 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 CEP128Q6ZU80 1094 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 STRADAQ7RTN6 431 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 ADGRG6Q86SQ4 1221 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 LRRTM4Q86VH4 590 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 EMC1Q8N766 993 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 ARMC2Q8NEN0 867 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 MYRIPQ8NFW9 859 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 CELF6Q96J87 481 aaKnown RBP15.62■□□□□ 0.09
VPS53-218ENST00000575207 SMIM14Q96QK8 99 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 NUDCD1Q96RS6 583 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 NOD2Q9HC29 1040 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 ARFGAP3Q9NP61 516 aa15.62■□□□□ 0.09
VPS53-218ENST00000575207 OR6C74A6NCV1 312 aa15.61■□□□□ 0.09
VPS53-218ENST00000575207 FGF10O15520 208 aaPredicted RBP15.61■□□□□ 0.09
VPS53-218ENST00000575207 WDPCPO95876 746 aa15.61■□□□□ 0.09
VPS53-218ENST00000575207 HPP00738 406 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms