RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 hCG_1818297A0A087WSY0 165 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 OR6C74A6NCV1 312 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 HACD1B0YJ81 288 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 STX7O15400 261 aaKnown RBP20.54■□□□□ 0.88
VPS53-216ENST00000574029 MFAP3LO75121 409 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 PRAMEF1O95521 474 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 KPNA2P52292 529 aaKnown RBP20.54■□□□□ 0.88
VPS53-216ENST00000574029 HADHBP55084 474 aaKnown RBP20.54■□□□□ 0.88
VPS53-216ENST00000574029 GPS2Q13227 327 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 IL10RAQ13651 578 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 BCL7AQ4VC05 210 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 IZUMO3Q5VZ72 239 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 CPZQ66K79 652 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 DET1Q7L5Y6 550 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 TMEM126BQ8IUX1 230 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 VSTM4Q8IW00 320 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 SLC38A9Q8NBW4 561 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 MR1Q95460 341 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 LINC00615Q96LM1 132 aaPredicted RBP20.54■□□□□ 0.88
VPS53-216ENST00000574029 LRFN5Q96NI6 719 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 FSD1LQ9BXM9 530 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 RSPH14Q9UHP6 348 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 BTRCQ9Y297 605 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 ALG6Q9Y672 507 aa20.54■□□□□ 0.88
VPS53-216ENST00000574029 BLACEA4D250 179 aa20.53■□□□□ 0.88
VPS53-216ENST00000574029 SGTAO43765 313 aa20.53■□□□□ 0.88
VPS53-216ENST00000574029 AGTP01019 485 aa20.53■□□□□ 0.88
VPS53-216ENST00000574029 TPM1P09493 284 aa20.53■□□□□ 0.88
VPS53-216ENST00000574029 LPOP22079 712 aaPredicted RBP20.53■□□□□ 0.88
VPS53-216ENST00000574029 TMTC4Q5T4D3 741 aa20.53■□□□□ 0.88
VPS53-216ENST00000574029 PAPD7Q5XG87 772 aaKnown RBP20.53■□□□□ 0.88
VPS53-216ENST00000574029 ARMC6Q6NXE6 501 aa20.53■□□□□ 0.88
VPS53-216ENST00000574029 KATNAL2Q8IYT4 538 aa20.53■□□□□ 0.88
VPS53-216ENST00000574029 SPDYE1Q8NFV5 336 aaPredicted RBP20.53■□□□□ 0.88
VPS53-216ENST00000574029 HAUS1Q96CS2 278 aa20.53■□□□□ 0.88
VPS53-216ENST00000574029 RMDN2Q96LZ7 410 aa20.53■□□□□ 0.88
VPS53-216ENST00000574029 GORASP1Q9BQQ3 440 aa20.53■□□□□ 0.88
VPS53-216ENST00000574029 SLC25A23Q9BV35 468 aa20.53■□□□□ 0.88
VPS53-216ENST00000574029 ARL5AQ9Y689 179 aa20.53■□□□□ 0.88
VPS53-216ENST00000574029 TTLL8A6PVC2 850 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 SRP72O76094 671 aaKnown RBP20.52■□□□□ 0.88
VPS53-216ENST00000574029 ZRANB2O95218 330 aaKnown RBP eCLIP20.52■□□□□ 0.88
VPS53-216ENST00000574029 SLC35G4P0C7Q5 338 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 PYGMP11217 842 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 PGDP52209 483 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 TAF1AQ15573 450 aaPredicted RBP20.52■□□□□ 0.88
VPS53-216ENST00000574029 CAPRIN2Q6IMN6 1127 aaKnown RBP20.52■□□□□ 0.88
VPS53-216ENST00000574029 RCOR2Q8IZ40 523 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 GALNT11Q8NCW6 608 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 RNF214Q8ND24 703 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 ADAMTS17Q8TE56 1095 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 NAT14Q8WUY8 206 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 PPM1MQ96MI6 270 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 ING2Q9H160 280 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 GBA3Q9H227 469 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 CHST8Q9H2A9 424 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 ASB8Q9H765 288 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 ACSS2Q9NR19 701 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 COLEC10Q9Y6Z7 277 aa20.52■□□□□ 0.88
VPS53-216ENST00000574029 LRRK2Q5S007 2527 aa20.52■□□□□ 0.87
VPS53-216ENST00000574029 ARGFXA6NJG6 315 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 C2orf81A6NN90 581 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 AGAP14A8MT82 685 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 VPS4BO75351 444 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 KLK3P07288 261 aaPredicted RBP20.51■□□□□ 0.87
VPS53-216ENST00000574029 NDUFS1P28331 727 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 UQCRFS1P47985 274 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 ARCN1P48444 511 aaKnown RBP20.51■□□□□ 0.87
VPS53-216ENST00000574029 CCL11P51671 97 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 GEMP55040 296 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 GSDMDP57764 484 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 CHAF1BQ13112 559 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 NADK2Q4G0N4 442 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 PLEKHS1Q5SXH7 462 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 FBXO38Q6PIJ6 1188 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 RANBP10Q6VN20 620 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 DSELQ8IZU8 1212 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 OR4K2Q8NGD2 314 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 FICDQ9BVA6 458 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 GOLPH3Q9H4A6 298 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 SOHLH2Q9NX45 425 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 FAM8A1Q9UBU6 413 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 POMT2Q9UKY4 750 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 VPS4AQ9UN37 437 aa20.51■□□□□ 0.87
VPS53-216ENST00000574029 C5orf60A6NFR6 353 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 CEACAM4O75871 244 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 ANXA9O76027 345 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 POLBP06746 335 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 RAB40ALP0C0E4 278 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 POLR2CP19387 275 aaPredicted RBP20.5■□□□□ 0.87
VPS53-216ENST00000574029 ADRA1AP35348 466 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 PTGIRP43119 386 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 MARCKSL1P49006 195 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 XIAPP98170 497 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 PRAMEF17Q5VTA0 474 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 LCN10Q6JVE6 187 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 CFAP206Q8IYR0 622 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 EFCAB3Q8N7B9 438 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 OR4E2Q8NGC2 313 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 CPT1CQ8TCG5 803 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms