RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CADM4Q8NFZ8 388 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 OR6Y1Q8NGX8 325 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 OR2L2Q8NH16 312 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 HM13Q8TCT9 377 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 GLMNQ92990 594 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 TMEM159Q96B96 161 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 BIRC7Q96CA5 298 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 BMFQ96LC9 184 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 NSRP1Q9H0G5 558 aaKnown RBP13.43□□□□□ -0.26
CCDC40-209ENST00000573474 EBF2Q9HAK2 575 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 ZNHIT2Q9UHR6 403 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 TSR3Q9UJK0 312 aaKnown RBP13.43□□□□□ -0.26
CCDC40-209ENST00000573474 COL6A3P12111 3177 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 NEMP2A6NFY4 417 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 SUPT3HB4E1H0 165 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 UBXN8O00124 270 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 SLC16A5O15375 505 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 SNNO75324 88 aaPredicted RBP13.42□□□□□ -0.26
CCDC40-209ENST00000573474 SUPT3HO75486 399 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 C8GP07360 202 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 MTHFD2P13995 350 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 MAPK9P45984 424 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 BST1Q10588 318 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 SBSNQ6UWP8 590 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 SLC36A4Q6YBV0 504 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 GCNT7Q6ZNI0 430 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 ZCCHC23Q6ZST2 131 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 FRA10AC1Q70Z53 315 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 RAB44Q7Z6P3 723 aaPredicted RBP13.42□□□□□ -0.26
CCDC40-209ENST00000573474 C11orf96Q7Z7L8 435 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 AMZ2Q86W34 360 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 VRK3Q8IV63 474 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 CFAP206Q8IYR0 622 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 OXR1Q8N573 874 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 FAM174AQ8TBP5 190 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 SKA2Q8WVK7 121 aaPredicted RBP13.42□□□□□ -0.26
CCDC40-209ENST00000573474 ASB11Q8WXH4 323 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 SCARF2Q96GP6 870 aaPredicted RBP13.42□□□□□ -0.26
CCDC40-209ENST00000573474 SPACA7Q96KW9 195 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 CCT8L2Q96SF2 557 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 UHRF1Q96T88 793 aaPredicted RBP13.42□□□□□ -0.26
CCDC40-209ENST00000573474 GATA5Q9BWX5 397 aaPredicted RBP13.42□□□□□ -0.26
CCDC40-209ENST00000573474 PITPNM3Q9BZ71 974 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 THAP1Q9NVV9 213 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 SPATA6Q9NWH7 488 aaPredicted RBP13.42□□□□□ -0.26
CCDC40-209ENST00000573474 NUDT4Q9NZJ9 180 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 NCKIPSDQ9NZQ3 722 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 CA5BQ9Y2D0 317 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.42□□□□□ -0.26
CCDC40-209ENST00000573474 OARD1Q9Y530 152 aa13.42□□□□□ -0.26
CCDC40-209ENST00000573474 CCDC163A0A0D9SF12 145 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 A0A1W2PPC4 97 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 METTL12A8MUP2 240 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 TMEM114B3SHH9 223 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 TNFRSF10CO14798 259 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 KLK8O60259 260 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 SNX2O60749 519 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 EDF1O60869 148 aaKnown RBP13.41□□□□□ -0.26
CCDC40-209ENST00000573474 KCNJ13O60928 360 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 FAM107AO95990 144 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 S100BP04271 92 aaPredicted RBP13.41□□□□□ -0.26
CCDC40-209ENST00000573474 ENO2P09104 434 aaPredicted RBP13.41□□□□□ -0.26
CCDC40-209ENST00000573474 GFAPP14136 432 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 IMPDH1P20839 514 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 HTR1BP28222 390 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 RABIFP47224 123 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 PREPP48147 710 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 SLC1A6P48664 564 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 NAGLUP54802 743 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 RPA4Q13156 261 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 SP140Q13342 867 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 CES4AQ5XG92 561 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 FAM47EQ6ZV65 393 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 ABI3BPQ7Z7G0 1075 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 GALNT13Q8IUC8 556 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 SLC22A15Q8IZD6 547 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 FBXO39Q8N4B4 442 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 PTGR2Q8N8N7 351 aaPredicted RBP13.41□□□□□ -0.26
CCDC40-209ENST00000573474 OR56A4Q8NGH8 313 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 EXT2Q93063 718 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 PHF21BQ96EK2 531 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 WDR92Q96MX6 357 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 TIMM29Q9BSF4 260 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 SLC12A9Q9BXP2 914 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 TRIM54Q9BYV2 358 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 FAM107BQ9H098 131 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 COG4Q9H9E3 785 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 RDH14Q9HBH5 336 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 PARVBQ9HBI1 364 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 CYP4F12Q9HCS2 524 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 SLCO1B3Q9NPD5 702 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 FGFR1OP2Q9NVK5 253 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 CD274Q9NZQ7 290 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 GULP1Q9UBP9 304 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 FAM8A1Q9UBU6 413 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 ADAMTS6Q9UKP5 1117 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 INVSQ9Y283 1065 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 PRKAB1Q9Y478 270 aa13.41□□□□□ -0.26
CCDC40-209ENST00000573474 PCYT1BQ9Y5K3 369 aaPredicted RBP13.41□□□□□ -0.26
CCDC40-209ENST00000573474 TRIOO75962 3097 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms