RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 MACROD2A1Z1Q3 448 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 CCDC66A2RUB6 948 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 TLCD2A6NGC4 264 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 SOWAHDA6NJG2 315 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 KCNN4O15554 427 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 PJA2O43164 708 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 ARHGAP6O43182 974 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 CREG1O75629 220 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 CRTAMO95727 393 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 RECKO95980 971 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 EBLN1P0CF75 366 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 PYGMP11217 842 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 CASRP41180 1078 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 HSD11B2P80365 405 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 ACY1Q03154 408 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 DNTTIP2Q5QJE6 756 aaKnown RBP15.69■□□□□ 0.1
CLN3-229ENST00000567963 DUS1LQ6P1R4 473 aaKnown RBP15.69■□□□□ 0.1
CLN3-229ENST00000567963 DARS2Q6PI48 645 aaKnown RBP15.69■□□□□ 0.1
CLN3-229ENST00000567963 CERS6Q6ZMG9 384 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 D2HGDHQ8N465 521 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 CCDC110Q8TBZ0 833 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 PANX2Q96RD6 677 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 FAM118BQ9BPY3 351 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 C19orf43Q9BQ61 176 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 KIR3DX1Q9H7L2 352 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 FGF21Q9NSA1 209 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 SLC24A2Q9UI40 661 aa15.69■□□□□ 0.1
CLN3-229ENST00000567963 OR6C74A6NCV1 312 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 STK10O94804 968 aaKnown RBP15.68■□□□□ 0.1
CLN3-229ENST00000567963 NTRK1P04629 796 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 RALBP11234 206 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 ARL4DP49703 201 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 NAP1L1P55209 391 aaKnown RBP15.68■□□□□ 0.1
CLN3-229ENST00000567963 RWDD2BP57060 319 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 DNASE1L3Q13609 305 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 GSE1Q14687 1217 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 CAPRIN2Q6IMN6 1127 aaKnown RBP15.68■□□□□ 0.1
CLN3-229ENST00000567963 DENND5AQ6IQ26 1287 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 AADACL2Q6P093 401 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 OOSP2Q86WS3 158 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 CFAP206Q8IYR0 622 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 LILRA3Q8N6C8 439 aaPredicted RBP15.68■□□□□ 0.1
CLN3-229ENST00000567963 CT55Q8WUE5 264 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 ULK4Q96C45 1275 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 DCUN1D1Q96GG9 259 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 SPATA13Q96N96 652 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 AKIRIN1Q9H9L7 192 aaPredicted RBP15.68■□□□□ 0.1
CLN3-229ENST00000567963 ARNT2Q9HBZ2 717 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 FAM8A1Q9UBU6 413 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 CRLS1Q9UJA2 301 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 POLHQ9Y253 713 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 COLEC10Q9Y6Z7 277 aa15.68■□□□□ 0.1
CLN3-229ENST00000567963 C17orf113A0A1B0GUU1 675 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 PIPSLA2A3N6 862 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 BTNL10A8MVZ5 291 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 C21orf140B9A014 251 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 TJP3O95049 919 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 POLBP06746 335 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 SLC35G4P0C7Q5 338 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 ATP1B2P14415 290 aaPredicted RBP15.67■□□□□ 0.1
CLN3-229ENST00000567963 HADHAP40939 763 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 PRLHRP49683 370 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 ZNF140P52738 457 aaPredicted RBP15.67■□□□□ 0.1
CLN3-229ENST00000567963 TUBB4BP68371 445 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 TMPRSS15P98073 1019 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 TUBB2AQ13885 445 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 LACTB2Q53H82 288 aaPredicted RBP15.67■□□□□ 0.1
CLN3-229ENST00000567963 SNX20Q7Z614 316 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 TMEM135Q86UB9 458 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 TMTC1Q8IUR5 882 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 CARFQ8N187 725 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 NXPE1Q8N323 547 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 ALG3Q92685 438 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 PPP1R2P1Q96PQ5 205 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 TBL1YQ9BQ87 522 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 CCM2Q9BSQ5 444 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 TUBB2BQ9BVA1 445 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 TWSG1Q9GZX9 223 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 FAM96AQ9H5X1 160 aa15.67■□□□□ 0.1
CLN3-229ENST00000567963 CDC14CA4D256 554 aa15.66■□□□□ 0.1
CLN3-229ENST00000567963 LDB2O43679 373 aa15.66■□□□□ 0.1
CLN3-229ENST00000567963 ZBTB11O95625 1053 aaPredicted RBP15.66■□□□□ 0.1
CLN3-229ENST00000567963 CETN2P41208 172 aa15.66■□□□□ 0.1
CLN3-229ENST00000567963 KPNA2P52292 529 aaKnown RBP15.66■□□□□ 0.1
CLN3-229ENST00000567963 SPARCL1Q14515 664 aa15.66■□□□□ 0.1
CLN3-229ENST00000567963 ARMC6Q6NXE6 501 aa15.66■□□□□ 0.1
CLN3-229ENST00000567963 FAM199XQ6PEV8 388 aaPredicted RBP15.66■□□□□ 0.1
CLN3-229ENST00000567963 KLHDC8BQ8IXV7 354 aa15.66■□□□□ 0.1
CLN3-229ENST00000567963 OR4E2Q8NGC2 313 aa15.66■□□□□ 0.1
CLN3-229ENST00000567963 HEXDCQ8WVB3 486 aa15.66■□□□□ 0.1
CLN3-229ENST00000567963 RMDN2Q96LZ7 410 aa15.66■□□□□ 0.1
CLN3-229ENST00000567963 COPS8Q99627 209 aa15.66■□□□□ 0.1
CLN3-229ENST00000567963 GPR87Q9BY21 358 aa15.66■□□□□ 0.1
CLN3-229ENST00000567963 LACRTQ9GZZ8 138 aa15.66■□□□□ 0.1
CLN3-229ENST00000567963 KCND1Q9NSA2 647 aa15.66■□□□□ 0.1
CLN3-229ENST00000567963 FEZ2Q9UHY8 353 aaPredicted RBP15.66■□□□□ 0.1
CLN3-229ENST00000567963 TP53TG5Q9Y2B4 290 aa15.66■□□□□ 0.1
CLN3-229ENST00000567963 REXO2Q9Y3B8 237 aaKnown RBP15.66■□□□□ 0.1
CLN3-229ENST00000567963 CFAP99D6REC4 459 aa15.65■□□□□ 0.1
CLN3-229ENST00000567963 MKRN2OSH3BPM6 223 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms