RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 TUBB2BQ9BVA1 445 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 KCND1Q9NSA2 647 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 SMOXQ9NWM0 555 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 SLC24A2Q9UI40 661 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 CPNE3O75131 537 aaKnown RBP16.44■□□□□ 0.22
CLN3-211ENST00000564091 ZBTB11O95625 1053 aaPredicted RBP16.44■□□□□ 0.22
CLN3-211ENST00000564091 POLBP06746 335 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 KPNA2P52292 529 aaKnown RBP16.44■□□□□ 0.22
CLN3-211ENST00000564091 PDE1BQ01064 536 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 MPP3Q13368 585 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 LAMB3Q13751 1172 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 LCN10Q6JVE6 187 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 ARMC6Q6NXE6 501 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 SYVN1Q86TM6 617 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 LILRA3Q8N6C8 439 aaPredicted RBP16.44■□□□□ 0.22
CLN3-211ENST00000564091 OR2L2Q8NH16 312 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 ZNF501Q96CX3 271 aaPredicted RBP16.44■□□□□ 0.22
CLN3-211ENST00000564091 QKIQ96PU8 341 aaKnown RBP eCLIP16.44■□□□□ 0.22
CLN3-211ENST00000564091 VAT1Q99536 393 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 SLC25A23Q9BV35 468 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 FSD1LQ9BXM9 530 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 CHST8Q9H2A9 424 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 SOHLH2Q9NX45 425 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 RSPH14Q9UHP6 348 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 ALG6Q9Y672 507 aa16.44■□□□□ 0.22
CLN3-211ENST00000564091 hCG_1818297A0A087WSY0 165 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 CBFA2T2O43439 604 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 PSTPIP1O43586 416 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 MFAP3LO75121 409 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 LCA5LO95447 670 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 POLR2CP19387 275 aaPredicted RBP16.43■□□□□ 0.22
CLN3-211ENST00000564091 GNLYP22749 145 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 MARCKSL1P49006 195 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 PGDP52209 483 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 OLIG2Q13516 323 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 GSE1Q14687 1217 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 TCEAL1Q15170 157 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 NADK2Q4G0N4 442 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 TFDP3Q5H9I0 405 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 FAM69BQ5VUD6 431 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 DAAM2Q86T65 1068 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 VSTM4Q8IW00 320 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 CFAP206Q8IYR0 622 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 OR4E2Q8NGC2 313 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 OR4K2Q8NGD2 314 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 CPT1CQ8TCG5 803 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 SEC14L1Q92503 715 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 RMDN2Q96LZ7 410 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 APOL2Q9BQE5 337 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 ANP32EQ9BTT0 268 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 FICDQ9BVA6 458 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 HEMGNQ9BXL5 484 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 TLR10Q9BXR5 811 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 ING2Q9H160 280 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 ASB8Q9H765 288 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 KIR3DX1Q9H7L2 352 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 ACSS2Q9NR19 701 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 FKBPLQ9UIM3 349 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 ACSL5Q9ULC5 683 aa16.43■□□□□ 0.22
CLN3-211ENST00000564091 SLC9B1P1A6NJY1 282 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 SGTAO43765 313 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 VPS4BO75351 444 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 SRP72O76094 671 aaKnown RBP16.42■□□□□ 0.22
CLN3-211ENST00000564091 ZRANB2O95218 330 aaKnown RBP eCLIP16.42■□□□□ 0.22
CLN3-211ENST00000564091 TPM1P09493 284 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 SLC35G4P0C7Q5 338 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 RBL1P28749 1068 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 KRT33BQ14525 404 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 PLEKHS1Q5SXH7 462 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 TMTC4Q5T4D3 741 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 HIST2H2BCQ6DN03 193 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 ZNF517Q6ZMY9 492 aaPredicted RBP16.42■□□□□ 0.22
CLN3-211ENST00000564091 CCDC50Q8IVM0 306 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 EFCAB3Q8N7B9 438 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 ZFPM2Q8WW38 1151 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 NRTNQ99748 197 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 GORASP1Q9BQQ3 440 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 LRRC4CQ9HCJ2 640 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 TRHDEQ9UKU6 1024 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 INTUQ9ULD6 942 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 VPS4AQ9UN37 437 aa16.42■□□□□ 0.22
CLN3-211ENST00000564091 C2orf81A6NN90 581 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 HACD1B0YJ81 288 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 MEN1O00255 615 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 KLK3P07288 261 aaPredicted RBP16.41■□□□□ 0.22
CLN3-211ENST00000564091 LPOP22079 712 aaPredicted RBP16.41■□□□□ 0.22
CLN3-211ENST00000564091 CDH3P22223 829 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 PTGIRP43119 386 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 XIAPP98170 497 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 ABRQ12979 859 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 TAF1AQ15573 450 aaPredicted RBP16.41■□□□□ 0.22
CLN3-211ENST00000564091 BCL7AQ4VC05 210 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 IZUMO3Q5VZ72 239 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 CAPRIN2Q6IMN6 1127 aaKnown RBP16.41■□□□□ 0.22
CLN3-211ENST00000564091 KATNAL2Q8IYT4 538 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 RCOR2Q8IZ40 523 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 ENDOVQ8N8Q3 282 aaKnown RBP16.41■□□□□ 0.22
CLN3-211ENST00000564091 OR8K5Q8NH50 307 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 LINC00615Q96LM1 132 aaPredicted RBP16.41■□□□□ 0.22
CLN3-211ENST00000564091 GBA3Q9H227 469 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms