RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ADAM2Q99965 735 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 COMMD8Q9NX08 183 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 MARCH2Q9P0N8 246 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 AASSQ9UDR5 926 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 ADGRE2Q9UHX3 823 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 PDE10AQ9Y233 779 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 ERGIC3Q9Y282 383 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 IQCA1LA6NCM1 817 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 STX16O14662 325 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 PRAMEF11O60813 436 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 TULP3O75386 442 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 VPS26AO75436 327 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 JUNBP17275 347 aaPredicted RBP13.02□□□□□ -0.33
CLN3-210ENST00000563874 FSHRP23945 695 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 ALDH4A1P30038 563 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 RAD23AP54725 363 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 LSM3P62310 102 aaKnown RBP13.02□□□□□ -0.33
CLN3-210ENST00000563874 ABRAXAS2Q15018 415 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 FAM110CQ1W6H9 321 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 ZRANB3Q5FWF4 1079 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 OR2T12Q8NG77 320 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 FRS2Q8WU20 508 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 SUSD3Q96L08 255 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 NLE1Q9NVX2 485 aaPredicted RBP13.02□□□□□ -0.33
CLN3-210ENST00000563874 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.02□□□□□ -0.33
CLN3-210ENST00000563874 GNPTGQ9UJJ9 305 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 BAG5Q9UL15 447 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 SCML2Q9UQR0 700 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 INVSQ9Y283 1065 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 PCDHGC4Q9Y5F7 938 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 SLC30A1Q9Y6M5 507 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 DOCK4Q8N1I0 1966 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 IGLV3-10A0A075B6K4 115 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 E5RI56 91 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 FFAR3O14843 346 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 GPR42O15529 346 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 HS6ST1O60243 411 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 GUCA1CO95843 209 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 PKMP14618 531 aaKnown RBP13.01□□□□□ -0.33
CLN3-210ENST00000563874 GSTM2P28161 218 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 THPOP40225 353 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 IL2P60568 153 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 FXNQ16595 210 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 PARP15Q460N3 678 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 GNASQ5JWF2 1037 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 CTSL3PQ5NE16 218 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 NKAPQ8N5F7 415 aaKnown RBP13.01□□□□□ -0.33
CLN3-210ENST00000563874 LPCAT1Q8NF37 534 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 CD200R1Q8TD46 325 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 TRIB3Q96RU7 358 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 NEUROG3Q9Y4Z2 214 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.01□□□□□ -0.33
CLN3-210ENST00000563874 XPNPEP2O43895 674 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 TBC1D4O60343 1298 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 PRKD3O94806 890 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 PRSS23O95084 383 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 SLC2A4P14672 509 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 HOXC8P31273 242 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 MC4RP32245 332 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 RPL38P63173 70 aaKnown RBP13.01□□□□□ -0.33
CLN3-210ENST00000563874 MAP2K5Q13163 448 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 SKIV2LQ15477 1246 aaKnown RBP13.01□□□□□ -0.33
CLN3-210ENST00000563874 TRIM16LQ309B1 348 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 GTDC1Q4AE62 458 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 AFTPHQ6ULP2 937 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 EFL1Q7Z2Z2 1120 aaKnown RBP13.01□□□□□ -0.33
CLN3-210ENST00000563874 TMEM179BQ7Z7N9 219 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 ZNF280BQ86YH2 543 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 PHACTR4Q8IZ21 702 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 DPP10Q8N608 796 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 ZNF555Q8NEP9 628 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 OR4F6Q8NGB9 312 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 CNDP2Q96KP4 475 aaKnown RBP13.01□□□□□ -0.33
CLN3-210ENST00000563874 GPN2Q9H9Y4 310 aaPredicted RBP13.01□□□□□ -0.33
CLN3-210ENST00000563874 ZFP14Q9HCL3 533 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 PCDH12Q9NPG4 1184 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 SMPD4Q9NXE4 827 aa13.01□□□□□ -0.33
CLN3-210ENST00000563874 PRG3Q9Y2Y8 225 aaPredicted RBP13.01□□□□□ -0.33
CLN3-210ENST00000563874 DICER1Q9UPY3 1922 aaKnown RBP13□□□□□ -0.33
CLN3-210ENST00000563874 TMEM221A6NGB7 291 aa13□□□□□ -0.33
CLN3-210ENST00000563874 KCNQ1P51787 676 aa13□□□□□ -0.33
CLN3-210ENST00000563874 CBX2Q14781 532 aaPredicted RBP13□□□□□ -0.33
CLN3-210ENST00000563874 LAPTM4AQ15012 233 aa13□□□□□ -0.33
CLN3-210ENST00000563874 SGO1Q5FBB7 561 aa13□□□□□ -0.33
CLN3-210ENST00000563874 NADSYN1Q6IA69 706 aa13□□□□□ -0.33
CLN3-210ENST00000563874 LAIR2Q6ISS4 152 aa13□□□□□ -0.33
CLN3-210ENST00000563874 TXNDC11Q6PKC3 985 aa13□□□□□ -0.33
CLN3-210ENST00000563874 SLC16A12Q6ZSM3 486 aa13□□□□□ -0.33
CLN3-210ENST00000563874 TAS2R42Q7RTR8 314 aa13□□□□□ -0.33
CLN3-210ENST00000563874 PEX13Q92968 403 aa13□□□□□ -0.33
CLN3-210ENST00000563874 FATE1Q969F0 183 aa13□□□□□ -0.33
CLN3-210ENST00000563874 FBXO32Q969P5 355 aa13□□□□□ -0.33
CLN3-210ENST00000563874 NCLNQ969V3 563 aa13□□□□□ -0.33
CLN3-210ENST00000563874 FKBP10Q96AY3 582 aa13□□□□□ -0.33
CLN3-210ENST00000563874 SLC47A1Q96FL8 570 aa13□□□□□ -0.33
CLN3-210ENST00000563874 PAK1IP1Q9NWT1 392 aaPredicted RBP13□□□□□ -0.33
CLN3-210ENST00000563874 DAPK2Q9UIK4 370 aa13□□□□□ -0.33
CLN3-210ENST00000563874 MYO16Q9Y6X6 1858 aa13□□□□□ -0.33
CLN3-210ENST00000563874 SOBPA7XYQ1 873 aa13□□□□□ -0.33
CLN3-210ENST00000563874 LSM1O15116 133 aaKnown RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms