RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TMEM184BQ9Y519 407 aaPredicted RBP16.47■□□□□ 0.23
CLK3-210ENST00000563112 HEBP2Q9Y5Z4 205 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 CFAP20Q9Y6A4 193 aaKnown RBP16.47■□□□□ 0.23
CLK3-210ENST00000563112 ZNF462Q96JM2 2506 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 COL6A6A6NMZ7 2263 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 HELZ2Q9BYK8 2649 aaKnown RBP16.47■□□□□ 0.23
CLK3-210ENST00000563112 NRDCO43847 1150 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 KIF1CO43896 1103 aaKnown RBP16.46■□□□□ 0.23
CLK3-210ENST00000563112 STK17BO94768 372 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 LIFP15018 202 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 ACRV1P26436 265 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 NDUFS1P28331 727 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 ARL4DP49703 201 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 CACNG1Q06432 222 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 CDH17Q12864 832 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 IL11RAQ14626 422 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 MEI1Q5TIA1 1274 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 ARMC6Q6NXE6 501 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 PPP1R21Q6ZMI0 780 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 ZNF605Q86T29 641 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 NAT14Q8WUY8 206 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 C1orf54Q8WWF1 131 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 KLHL6Q8WZ60 621 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 OR6C1Q96RD1 312 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 SPRY4Q9C004 299 aa16.46■□□□□ 0.23
CLK3-210ENST00000563112 GPN2Q9H9Y4 310 aaPredicted RBP16.46■□□□□ 0.23
CLK3-210ENST00000563112 PIH1D1Q9NWS0 290 aaKnown RBP16.46■□□□□ 0.23
CLK3-210ENST00000563112 TRBV5-4A0A0C4DH59 114 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 SGTAO43765 313 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 WT1P19544 449 aaPredicted RBP16.45■□□□□ 0.22
CLK3-210ENST00000563112 ABHD18Q0P651 414 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 OASLQ15646 514 aaKnown RBP16.45■□□□□ 0.22
CLK3-210ENST00000563112 OOSP2Q86WS3 158 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 RASGRP3Q8IV61 690 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 ESX1Q8N693 406 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 CCDC89Q8N998 374 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 SIDT2Q8NBJ9 832 aaKnown RBP16.45■□□□□ 0.22
CLK3-210ENST00000563112 OR52K1Q8NGK4 314 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 EXTL1Q92935 676 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.45■□□□□ 0.22
CLK3-210ENST00000563112 CD180Q99467 661 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 ULBP3Q9BZM4 244 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 ETNK1Q9HBU6 452 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 LZTFL1Q9NQ48 299 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 HRASLS2Q9NWW9 162 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 SLC24A2Q9UI40 661 aa16.45■□□□□ 0.22
CLK3-210ENST00000563112 IGLV3-16A0A075B6K0 115 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 UBA6A0AVT1 1052 aaPredicted RBP16.44■□□□□ 0.22
CLK3-210ENST00000563112 HEATR9A2RTY3 570 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 OR5K3A6NET4 321 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 MROH6A6NGR9 719 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 ZNF891A8MT65 544 aaPredicted RBP16.44■□□□□ 0.22
CLK3-210ENST00000563112 IFRD1O00458 451 aaPredicted RBP16.44■□□□□ 0.22
CLK3-210ENST00000563112 GSTM1P09488 218 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 NELFEP18615 380 aaKnown RBP16.44■□□□□ 0.22
CLK3-210ENST00000563112 CDKN1CP49918 316 aaPredicted RBP16.44■□□□□ 0.22
CLK3-210ENST00000563112 SH3BP2P78314 561 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 CYP4F2P78329 520 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 GSTM4Q03013 218 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 SNX1Q13596 522 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 MAP7Q14244 749 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 DNTTIP2Q5QJE6 756 aaKnown RBP16.44■□□□□ 0.22
CLK3-210ENST00000563112 CAPRIN2Q6IMN6 1127 aaKnown RBP16.44■□□□□ 0.22
CLK3-210ENST00000563112 DUS1LQ6P1R4 473 aaKnown RBP16.44■□□□□ 0.22
CLK3-210ENST00000563112 ZNF662Q6ZS27 426 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 SPDYE1Q8NFV5 336 aaPredicted RBP16.44■□□□□ 0.22
CLK3-210ENST00000563112 MAIP1Q8WWC4 291 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 RMDN2Q96LZ7 410 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 TTC1Q99614 292 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 SLC12A9Q9BXP2 914 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 KIR3DX1Q9H7L2 352 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 COG4Q9H9E3 785 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 PDE7BQ9NP56 450 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 RAB6BQ9NRW1 208 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 SMARCAL1Q9NZC9 954 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 PAK5Q9P286 719 aa16.44■□□□□ 0.22
CLK3-210ENST00000563112 LOC101059948A0A1B0GTJ6 334 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 CCDC78A2IDD5 438 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 QSOX1O00391 747 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 SUN1O94901 812 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 AP2A2O94973 939 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 DLGAP3O95886 979 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 SFTPCP11686 197 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 MSNP26038 577 aaKnown RBP16.43■□□□□ 0.22
CLK3-210ENST00000563112 NSG1P42857 185 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 ACY1Q03154 408 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 PRKAA1Q13131 559 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 RPA4Q13156 261 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 ITIH4Q14624 930 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 CCNG2Q16589 344 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 TBR1Q16650 682 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 LINC00303Q3SY05 128 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 C6orf15Q6UXA7 325 aaPredicted RBP16.43■□□□□ 0.22
CLK3-210ENST00000563112 TIPARPQ7Z3E1 657 aaKnown RBP16.43■□□□□ 0.22
CLK3-210ENST00000563112 BPHLQ86WA6 291 aaPredicted RBP16.43■□□□□ 0.22
CLK3-210ENST00000563112 PPP1R3BQ86XI6 285 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 KMT5CQ86Y97 462 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 LRRC8AQ8IWT6 810 aa16.43■□□□□ 0.22
CLK3-210ENST00000563112 LILRA3Q8N6C8 439 aaPredicted RBP16.43■□□□□ 0.22
CLK3-210ENST00000563112 ELMO2Q96JJ3 720 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms