RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 NECAB3Q96P71 396 aaPredicted RBP9.1□□□□□ -0.95
VPS39-205ENST00000562258 GBP5Q96PP8 586 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 MIPEPQ99797 713 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 GDF15Q99988 308 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 PRDM6Q9NQX0 595 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 HRASLS2Q9NWW9 162 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 TAC3Q9UHF0 121 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 WDR90Q96KV7 1748 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 MUC6Q6W4X9 2439 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 GSRP00390 522 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 BPIP17213 487 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 OGNP20774 298 aaKnown RBP9.09□□□□□ -0.95
VPS39-205ENST00000562258 S100A3P33764 101 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 CD68P34810 354 aaPredicted RBP9.09□□□□□ -0.95
VPS39-205ENST00000562258 NRG1Q02297 640 aaPredicted RBP9.09□□□□□ -0.95
VPS39-205ENST00000562258 ZNF33AQ06730 810 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 DMTNQ08495 405 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 STX5Q13190 355 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 ADAM15Q13444 863 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 TTMPQ5BVD1 217 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 ZDHHC14Q8IZN3 488 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 IQCKQ8N0W5 287 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 KCT2Q8NC54 265 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 PIWIL2Q8TC59 973 aaKnown RBP9.09□□□□□ -0.95
VPS39-205ENST00000562258 TUBGCP5Q96RT8 1024 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 CCM2Q9BSQ5 444 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 BOCQ9BWV1 1114 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 PNPOQ9NVS9 261 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 GID8Q9NWU2 228 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 SELENONQ9NZV5 590 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 SUSD2Q9UGT4 822 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 SLC22A14Q9Y267 594 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.09□□□□□ -0.95
VPS39-205ENST00000562258 AZIN1O14977 448 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 KMOO15229 486 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 ZMPSTE24O75844 475 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 IPO13O94829 963 aaKnown RBP9.09□□□□□ -0.95
VPS39-205ENST00000562258 OR4F21O95013 312 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 MPSTP25325 297 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 CMPK1P30085 196 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 SPINT3P49223 89 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 RASA2Q15283 850 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 KDM7AQ6ZMT4 941 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 Q6ZS52 159 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 Q6ZSR6 202 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 RPS27LQ71UM5 84 aaKnown RBP9.09□□□□□ -0.95
VPS39-205ENST00000562258 TRPM8Q7Z2W7 1104 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 FRMD1Q8N878 549 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 OR2A12Q8NGT7 310 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 FAM162AQ96A26 154 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 IL17FQ96PD4 163 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 OR2M4Q96R27 311 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 PHACTR1Q9C0D0 580 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 MAGEE1Q9HCI5 957 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 FBXW2Q9UKT8 454 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 SBF1O95248 1867 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 DRGXA6NNA5 263 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 MLYCDO95822 493 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 PFKLP17858 780 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 AK4P27144 223 aaPredicted RBP9.09□□□□□ -0.95
VPS39-205ENST00000562258 HMGCLP35914 325 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 RPL26P61254 145 aaKnown RBP9.09□□□□□ -0.95
VPS39-205ENST00000562258 PWP1Q13610 501 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 SUZ12Q15022 739 aaKnown RBP9.09□□□□□ -0.95
VPS39-205ENST00000562258 FAAH2Q6GMR7 532 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 RFLNAQ6ZTI6 216 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 CHSY3Q70JA7 882 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 ACMSDQ8TDX5 336 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 RHBDD1Q8TEB9 315 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 ATOH1Q92858 354 aaPredicted RBP9.09□□□□□ -0.95
VPS39-205ENST00000562258 HAO1Q9UJM8 370 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 RPL26L1Q9UNX3 145 aaKnown RBP9.09□□□□□ -0.95
VPS39-205ENST00000562258 OR10H1Q9Y4A9 318 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 UNC13CQ8NB66 2214 aa9.09□□□□□ -0.95
VPS39-205ENST00000562258 URADA6NGE7 173 aa9.09□□□□□ -0.96
VPS39-205ENST00000562258 NUDT17P0C025 328 aa9.09□□□□□ -0.96
VPS39-205ENST00000562258 GNAZP19086 355 aa9.09□□□□□ -0.96
VPS39-205ENST00000562258 HNRNPA2B1P22626 353 aaKnown RBP9.09□□□□□ -0.96
VPS39-205ENST00000562258 NCALDP61601 193 aa9.09□□□□□ -0.96
VPS39-205ENST00000562258 STX4Q12846 297 aa9.09□□□□□ -0.96
VPS39-205ENST00000562258 DEFB133Q30KQ1 61 aa9.09□□□□□ -0.96
VPS39-205ENST00000562258 ARL13AQ5H913 290 aaPredicted RBP9.09□□□□□ -0.96
VPS39-205ENST00000562258 TMEM174Q8WUU8 243 aa9.09□□□□□ -0.96
VPS39-205ENST00000562258 FANCEQ9HB96 536 aa9.09□□□□□ -0.96
VPS39-205ENST00000562258 ZNF490Q9ULM2 529 aaPredicted RBP9.09□□□□□ -0.96
VPS39-205ENST00000562258 MTF2Q9Y483 593 aaPredicted RBP9.09□□□□□ -0.96
VPS39-205ENST00000562258 SLCO1B7G3V0H7 640 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 SGTAO43765 313 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 SERPINI2O75830 405 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 FAM107AO95990 144 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 STC1P52823 247 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 COPAP53621 1224 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 MEF2AQ02078 507 aaPredicted RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 PLOD1Q02809 727 aaPredicted RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 FASTKQ14296 549 aaKnown RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 NFE2L1Q14494 772 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 TEDDM1Q5T9Z0 273 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 LIPMQ5VYY2 423 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 EIF1ADQ8N9N8 165 aaKnown RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 FCRL3Q96P31 734 aaPredicted RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms