RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CXorf40BQ96DE9 158 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 CCDC97Q96F63 343 aaPredicted RBP9.88□□□□□ -0.83
USP3-216ENST00000559873 TSPAN17Q96FV3 270 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 VPS39Q96JC1 886 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 BIRC8Q96P09 236 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 FUT8Q9BYC5 575 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 RHOJQ9H4E5 214 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 POT1Q9NUX5 634 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 TAS2R13Q9NYV9 303 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 KLHL42Q9P2K6 505 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 SLC23A2Q9UGH3 650 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 HEBP2Q9Y5Z4 205 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 EXOC1LA0A1B0GW35 172 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 PRR19A6NJB7 356 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 RHPN2P1A8MT19 583 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 EIF3FO00303 357 aaPredicted RBP9.87□□□□□ -0.83
USP3-216ENST00000559873 NUDT21O43809 227 aaKnown RBP9.87□□□□□ -0.83
USP3-216ENST00000559873 NOBOXO60393 691 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 CBFA2T3O75081 653 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 NIPSNAP2O75323 286 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 ERLIN1O75477 346 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 HAUS5O94927 633 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 VIPP01282 170 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 AHSGP02765 367 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 GP1BAP07359 652 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 INHBAP08476 426 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 GIMD1P0DJR0 217 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 CEACAM1P13688 526 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 ENO3P13929 434 aaPredicted RBP9.87□□□□□ -0.83
USP3-216ENST00000559873 GLB1P16278 677 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 ITGB6P18564 788 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 CD9P21926 228 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 RPL10P27635 214 aaKnown RBP9.87□□□□□ -0.83
USP3-216ENST00000559873 SPRP35270 261 aaPredicted RBP9.87□□□□□ -0.83
USP3-216ENST00000559873 SKIV2L2P42285 1042 aaKnown RBP9.87□□□□□ -0.83
USP3-216ENST00000559873 FASLGP48023 281 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 RGS4P49798 205 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 NOVA1P51513 510 aaKnown RBP9.87□□□□□ -0.83
USP3-216ENST00000559873 HHEXQ03014 270 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 HSPA14Q0VDF9 509 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 ILKQ13418 452 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 PDAP1Q13442 181 aaKnown RBP9.87□□□□□ -0.83
USP3-216ENST00000559873 KRT33BQ14525 404 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 TRIP6Q15654 476 aaKnown RBP9.87□□□□□ -0.83
USP3-216ENST00000559873 GRTP1Q5TC63 336 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 CNSTQ6PJW8 725 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 MICALCLQ6ZW33 695 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 GLRX5Q86SX6 157 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 PDZD3Q86UT5 571 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 SLC35F3Q8IY50 421 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 NAGSQ8N159 534 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 KRT222Q8N1A0 295 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 SFRP1Q8N474 314 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 PNPLA1Q8N8W4 532 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 GPR156Q8NFN8 814 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 WDR48Q8TAF3 677 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 SLC37A2Q8TED4 501 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 NAT14Q8WUY8 206 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 SKA2Q8WVK7 121 aaPredicted RBP9.87□□□□□ -0.83
USP3-216ENST00000559873 FOPNLQ96NB1 174 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 RBBP8Q99708 897 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 CCDC77Q9BR77 488 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 AARSD1Q9BTE6 412 aaKnown RBP9.87□□□□□ -0.83
USP3-216ENST00000559873 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.87□□□□□ -0.83
USP3-216ENST00000559873 ZMYND15Q9H091 742 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 WWP1Q9H0M0 922 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 SARS2Q9NP81 518 aaKnown RBP9.87□□□□□ -0.83
USP3-216ENST00000559873 PRDM8Q9NQV8 689 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 IMP3Q9NV31 184 aaKnown RBP9.87□□□□□ -0.83
USP3-216ENST00000559873 SLC17A6Q9P2U8 582 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 TBC1D29Q9UFV1 150 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 PADI4Q9UM07 663 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 ST14Q9Y5Y6 855 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 COLEC10Q9Y6Z7 277 aa9.87□□□□□ -0.83
USP3-216ENST00000559873 PIKFYVEQ9Y2I7 2098 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 ARID1BQ8NFD5 2236 aaPredicted RBP9.86□□□□□ -0.83
USP3-216ENST00000559873 FAM95CA0A1B0GW59 222 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 SLC5A10A0PJK1 596 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 RIPK2O43353 540 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 RFPL3O75679 317 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 KRT38O76015 456 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 CBSLP0DN79 551 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 MYBL2P10244 700 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 MTHFD1P11586 935 aaKnown RBP9.86□□□□□ -0.83
USP3-216ENST00000559873 PNLIPP16233 465 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 XRCC1P18887 633 aaPredicted RBP9.86□□□□□ -0.83
USP3-216ENST00000559873 ACP1P24666 158 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 AOAHP28039 575 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 HOXD11P31277 338 aaPredicted RBP9.86□□□□□ -0.83
USP3-216ENST00000559873 CCR7P32248 378 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 CBSP35520 551 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 PREPP48147 710 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 SERPINB9P50453 376 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 LIMK2P53671 638 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 PUM1Q14671 1186 aaKnown RBP eCLIP9.86□□□□□ -0.83
USP3-216ENST00000559873 UAP1Q16222 522 aaPredicted RBP9.86□□□□□ -0.83
USP3-216ENST00000559873 ZNF789Q5FWF6 425 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 HECTD2Q5U5R9 776 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 TTC23LQ6PF05 361 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 IYDQ6PHW0 289 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms