RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 HSPA14Q0VDF9 509 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 BMPR2Q13873 1038 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 ZNF460Q14592 562 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 KLHL38Q2WGJ6 581 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 ACSBG2Q5FVE4 666 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 IYDQ6PHW0 289 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 OGFOD3Q6PK18 319 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 LVRNQ6Q4G3 990 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 TMEM207Q6UWW9 146 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 CEP97Q8IW35 865 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 NAGSQ8N159 534 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 SDR16C5Q8N3Y7 309 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 MREGQ8N565 214 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 OR4C6Q8NH72 309 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 CD200R1Q8TD46 325 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 KCNJ9Q92806 393 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 RMDN2Q96LZ7 410 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 PANX3Q96QZ0 392 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 GPR22Q99680 433 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 OR52A5Q9H2C5 316 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 CCDC68Q9H2F9 335 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 LATS2Q9NRM7 1088 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 NLGN3Q9NZ94 848 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 TXNDC16Q9P2K2 825 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 TSR3Q9UJK0 312 aaKnown RBP12.56□□□□□ -0.4
SHMT2-227ENST00000557269 PCOLCE2Q9UKZ9 415 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 DOLKQ9UPQ8 538 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 COMMD10Q9Y6G5 202 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 U3KQA8 63 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 PIKFYVEQ9Y2I7 2098 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 CCDC151A5D8V7 595 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 OR52A4PA6NMU1 304 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 PDZK1P1A8MUH7 402 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 E5RI56 91 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 LIN7AO14910 233 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-227ENST00000557269 VPS26AO75436 327 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 SLCO2B1O94956 709 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 ITGA2BP08514 1039 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 GSTM1P09488 218 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 F3P13726 295 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 SPRP35270 261 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-227ENST00000557269 GMPRP36959 345 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 MSH2P43246 934 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 MAZP56270 477 aaKnown RBP12.55□□□□□ -0.4
SHMT2-227ENST00000557269 GSTM4Q03013 218 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 SLC14A1Q13336 389 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 GBX1Q14549 363 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 SUZ12Q15022 739 aaKnown RBP12.55□□□□□ -0.4
SHMT2-227ENST00000557269 BEND6Q5SZJ8 279 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-227ENST00000557269 C6orf132Q5T0Z8 1188 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 AGAP9Q5VTM2 703 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 CAPRIN2Q6IMN6 1127 aaKnown RBP12.55□□□□□ -0.4
SHMT2-227ENST00000557269 FAM45BPQ6NSW5 357 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 PAQR3Q6TCH7 311 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 ABRAXAS1Q6UWZ7 409 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 OTOAQ7RTW8 1153 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 SLC35F3Q8IY50 421 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 ZBTB2Q8N680 514 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 KYQ8NBH2 561 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 FAM45AQ8TCE6 357 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 SETD7Q8WTS6 366 aaKnown RBP12.55□□□□□ -0.4
SHMT2-227ENST00000557269 ZDHHC1Q8WTX9 485 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 ZBTB9Q96C00 473 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 INSM2Q96T92 566 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-227ENST00000557269 TSSK1BQ9BXA7 367 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 ZNF624Q9P2J8 865 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-227ENST00000557269 CTNNAL1Q9UBT7 734 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 ACSL5Q9ULC5 683 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 SLC39A10Q9ULF5 831 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 CORO1CQ9ULV4 474 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-227ENST00000557269 RUVBL2Q9Y230 463 aaKnown RBP12.55□□□□□ -0.4
SHMT2-227ENST00000557269 DHRS7Q9Y394 339 aa12.55□□□□□ -0.4
SHMT2-227ENST00000557269 CFAP20Q9Y6A4 193 aaKnown RBP12.55□□□□□ -0.4
SHMT2-227ENST00000557269 CABIN1Q9Y6J0 2220 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 KLHL33A6NCF5 533 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 F8W8V4 182 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 FLRT2O43155 660 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 CBFA2T3O75081 653 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 WISP3O95389 354 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-227ENST00000557269 APOA4P06727 396 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 INHBAP08476 426 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 NUDT17P0C025 328 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 CD9P21926 228 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 ACADLP28330 430 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 SLCO1A2P46721 670 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 LIMK1P53667 647 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 RPE65Q16518 533 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 PROX2Q3B8N5 592 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 MAP9Q49MG5 647 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 SYTL3Q4VX76 610 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 MROH9Q5TGP6 573 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 DUS1LQ6P1R4 473 aaKnown RBP12.54□□□□□ -0.4
SHMT2-227ENST00000557269 WASH2PQ6VEQ5 465 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 PIP4P1Q86T03 277 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 ALYREFQ86V81 257 aaKnown RBP12.54□□□□□ -0.4
SHMT2-227ENST00000557269 C17orf82Q86X59 251 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-227ENST00000557269 NAXDQ8IW45 347 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 CPNE9Q8IYJ1 553 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 SLC22A15Q8IZD6 547 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 SFRP1Q8N474 314 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms