RNA–Protein interactions for RNA: ENST00000556994.5

SRP54-213, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SRP54, Length 2,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-213ENST00000556994 DPP10Q8N608 796 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 TTC9BQ8N6N2 239 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 ZNF555Q8NEP9 628 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 OR2T12Q8NG77 320 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 HDAC2Q92769 488 aaKnown RBP11.23□□□□□ -0.61
SRP54-213ENST00000556994 TAMM41Q96BW9 452 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 AURKBQ96GD4 344 aaPredicted RBP11.23□□□□□ -0.61
SRP54-213ENST00000556994 TDRD1Q9BXT4 1180 aaKnown RBP11.23□□□□□ -0.61
SRP54-213ENST00000556994 AP5M1Q9H0R1 490 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 NLE1Q9NVX2 485 aaPredicted RBP11.23□□□□□ -0.61
SRP54-213ENST00000556994 RNF181Q9P0P0 153 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 INVSQ9Y283 1065 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 TRPV2Q9Y5S1 764 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 KRBA1A5PL33 1030 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 C16orf96A6NNT2 1141 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 KPNA1P52294 538 aaPredicted RBP11.23□□□□□ -0.61
SRP54-213ENST00000556994 GP2P55259 537 aaKnown RBP11.23□□□□□ -0.61
SRP54-213ENST00000556994 PURAQ00577 322 aaKnown RBP11.23□□□□□ -0.61
SRP54-213ENST00000556994 KCNC4Q03721 635 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 PWP1Q13610 501 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 CTSL3PQ5NE16 218 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 TTC23Q5W5X9 447 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 PHACTR4Q8IZ21 702 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 NKAPQ8N5F7 415 aaKnown RBP11.23□□□□□ -0.61
SRP54-213ENST00000556994 ATP6V0D2Q8N8Y2 350 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 CNIH3Q8TBE1 160 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 SLC47A1Q96FL8 570 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 OSBPL10Q9BXB5 764 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 PALMDQ9NP74 551 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 SMPD4Q9NXE4 827 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 FNIP2Q9P278 1114 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.23□□□□□ -0.61
SRP54-213ENST00000556994 SEPT3Q9UH03 358 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 TRMT6Q9UJA5 497 aaKnown RBP11.23□□□□□ -0.61
SRP54-213ENST00000556994 TRIM17Q9Y577 477 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 CPQQ9Y646 472 aa11.23□□□□□ -0.61
SRP54-213ENST00000556994 IGLV3-10A0A075B6K4 115 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 LOC100130705A0A1B0GUX0 176 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 KLK8O60259 260 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 PRAMEF11O60813 436 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 PRKD3O94806 890 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 NDST3O95803 873 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 NPPAP01160 153 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 SLC2A4P14672 509 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 JAK1P23458 1154 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 MRPL19P49406 292 aaKnown RBP11.22□□□□□ -0.61
SRP54-213ENST00000556994 EIF2B2P49770 351 aaKnown RBP11.22□□□□□ -0.61
SRP54-213ENST00000556994 ZNF140P52738 457 aaPredicted RBP11.22□□□□□ -0.61
SRP54-213ENST00000556994 SPIDRQ14159 915 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 ZRANB3Q5FWF4 1079 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 GDF6Q6KF10 455 aaPredicted RBP11.22□□□□□ -0.61
SRP54-213ENST00000556994 TXNDC11Q6PKC3 985 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 EFL1Q7Z2Z2 1120 aaKnown RBP11.22□□□□□ -0.61
SRP54-213ENST00000556994 NECAB2Q7Z6G3 386 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 OR7D4Q8NG98 312 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 OR4F6Q8NGB9 312 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 ZFP90Q8TF47 636 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 ALPK1Q96QP1 1244 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 ZNF347Q96SE7 839 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 FKBPLQ9UIM3 349 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 FBXO10Q9UK96 956 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 SNX5Q9Y5X3 404 aa11.22□□□□□ -0.61
SRP54-213ENST00000556994 SLC12A8A0AV02 714 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 FAM92AA1XBS5 289 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 CLDN25C9JDP6 229 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 E5RI56 91 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 FFAR3O14843 346 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 ANKRD28O15084 1053 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 LSM1O15116 133 aaKnown RBP11.21□□□□□ -0.61
SRP54-213ENST00000556994 GPR42O15529 346 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 B4GALT3O60512 393 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 VPS26AO75436 327 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 PKMP14618 531 aaKnown RBP11.21□□□□□ -0.61
SRP54-213ENST00000556994 PFKLP17858 780 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 IL2P60568 153 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 RPL38P63173 70 aaKnown RBP11.21□□□□□ -0.61
SRP54-213ENST00000556994 PPP2R2BQ00005 443 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 IFITM3Q01628 133 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 LAPTM4AQ15012 233 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 CTF1Q16619 201 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 GTDC1Q4AE62 458 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 C10orf120Q5SQS8 335 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 SLCO6A1Q86UG4 719 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 EFHBQ8N7U6 833 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 CD200R1Q8TD46 325 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 FATE1Q969F0 183 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 MUL1Q969V5 352 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 FAM162AQ96A26 154 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 MAGED4Q96JG8 741 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 BTN2A3PQ96KV6 586 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 TRIB3Q96RU7 358 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 NODALQ96S42 347 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 SPON2Q9BUD6 331 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 C1QTNF3Q9BXJ4 246 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 UGT2B28Q9BY64 529 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 ACTR8Q9H981 624 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 DNAJB9Q9UBS3 223 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 PADI3Q9ULW8 664 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 SCML2Q9UQR0 700 aa11.21□□□□□ -0.61
SRP54-213ENST00000556994 PCDHGC4Q9Y5F7 938 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms