RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 CCM2Q9BSQ5 444 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 KIFC1Q9BW19 673 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 MRM3Q9HC36 420 aaKnown RBP13.42□□□□□ -0.26
SHMT2-219ENST00000555563 CATSPERZQ9NTU4 200 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 AKAP7Q9P0M2 348 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-219ENST00000555563 MARCH4Q9P2E8 410 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-219ENST00000555563 PDP2Q9P2J9 529 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 KLHL3Q9UH77 587 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 C17orf113A0A1B0GUU1 675 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 A8MU76 341 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 GOLGA8MH3BSY2 632 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 RRP8O43159 456 aaKnown RBP13.41□□□□□ -0.26
SHMT2-219ENST00000555563 CCL4P13236 92 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 ARNTP27540 789 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 ITPKBP27987 946 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 CAPZBP47756 277 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 PREPP48147 710 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 SARNPP82979 210 aaKnown RBP13.41□□□□□ -0.26
SHMT2-219ENST00000555563 PPP1R7Q15435 360 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 FASTKD1Q53R41 847 aaKnown RBP13.41□□□□□ -0.26
SHMT2-219ENST00000555563 LYPLAL1Q5VWZ2 237 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 C19orf48Q6RUI8 117 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 CES3Q6UWW8 571 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 CERS6Q6ZMG9 384 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 LDB1Q86U70 411 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-219ENST00000555563 CREG2Q8IUH2 290 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 AGBL5Q8NDL9 886 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 ZNF248Q8NDW4 579 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 MCUQ8NE86 351 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 HNRNPLLQ8WVV9 542 aaKnown RBP13.41□□□□□ -0.26
SHMT2-219ENST00000555563 SLCO2A1Q92959 643 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 MFSD3Q96ES6 412 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 OR52A5Q9H2C5 316 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 SOX13Q9UN79 622 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 PCDHGA7Q9Y5G6 932 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 SAR1BQ9Y6B6 198 aa13.41□□□□□ -0.26
SHMT2-219ENST00000555563 QSOX1O00391 747 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 PRAMEF10O60809 474 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 C9P02748 559 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 FTH1P02794 183 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 GSTM1P09488 218 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 AMD1P17707 334 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 SLC5A2P31639 672 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 ABCG1P45844 678 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 LEPRP48357 1165 aaKnown RBP13.4□□□□□ -0.26
SHMT2-219ENST00000555563 MAPK10P53779 464 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 GSTM4Q03013 218 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 PTK6Q13882 451 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 PLCL1Q15111 1095 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 COL28A1Q2UY09 1125 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 AARS2Q5JTZ9 985 aaKnown RBP13.4□□□□□ -0.26
SHMT2-219ENST00000555563 RNASEH2BQ5TBB1 312 aaKnown RBP13.4□□□□□ -0.26
SHMT2-219ENST00000555563 CAPRIN2Q6IMN6 1127 aaKnown RBP13.4□□□□□ -0.26
SHMT2-219ENST00000555563 LRRC69Q6ZNQ3 347 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 ARHGAP22Q7Z5H3 698 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 PLXDC1Q8IUK5 500 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 SPACA3Q8IXA5 215 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 NAT8LQ8N9F0 302 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 KCNE4Q8WWG9 221 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 USP7Q93009 1102 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 PMEPA1Q969W9 287 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 SERPINB12Q96P63 405 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 TGM7Q96PF1 710 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 TTC1Q99614 292 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 TRIM56Q9BRZ2 755 aaKnown RBP13.4□□□□□ -0.26
SHMT2-219ENST00000555563 KIR3DX1Q9H7L2 352 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 XAB2Q9HCS7 855 aaKnown RBP13.4□□□□□ -0.26
SHMT2-219ENST00000555563 KCND1Q9NSA2 647 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 FOXJ2Q9P0K8 574 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 ASIC3Q9UHC3 531 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 PCYOX1Q9UHG3 505 aa13.4□□□□□ -0.26
SHMT2-219ENST00000555563 PIKFYVEQ9Y2I7 2098 aa13.4□□□□□ -0.27
SHMT2-219ENST00000555563 ADAMTS20P59510 1910 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 EFCAB7A8K855 629 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 C9orf172C9J069 976 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 CD3EAPO15446 510 aaKnown RBP13.39□□□□□ -0.27
SHMT2-219ENST00000555563 CAPN5O15484 640 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-219ENST00000555563 VAPBO95292 243 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 ANKRD34CP0C6C1 535 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 OR56A5P0C7T3 313 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 FGF3P11487 239 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-219ENST00000555563 MLNP12872 115 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 PDHA2P29803 388 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 CSTF2P33240 577 aaKnown RBP eCLIP13.39□□□□□ -0.27
SHMT2-219ENST00000555563 PTGIRP43119 386 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 MAGEA3P43357 314 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 PPP1CAP62136 330 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 RPA4Q13156 261 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 BOP1Q14137 746 aaKnown RBP13.39□□□□□ -0.27
SHMT2-219ENST00000555563 KIAA0930Q6ICG6 404 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-219ENST00000555563 CASC4Q6P4E1 433 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 NAPRTQ6XQN6 538 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 FAM129CQ86XR2 697 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 KLHL7Q8IXQ5 586 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 PPIL6Q8IXY8 311 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 AGGF1Q8N302 714 aaeCLIP13.39□□□□□ -0.27
SHMT2-219ENST00000555563 OTUD6BQ8N6M0 293 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 LKAAEAR1Q8TD35 194 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 ELMO1Q92556 727 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 CRELD1Q96HD1 420 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms