RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 P2RY12Q9H244 342 aa13.82□□□□□ -0.2
PTCH1-226ENST00000553011 STN1Q9H668 368 aaKnown RBP13.82□□□□□ -0.2
PTCH1-226ENST00000553011 KCNK4Q9NYG8 393 aa13.82□□□□□ -0.2
PTCH1-226ENST00000553011 MSRB2Q9Y3D2 182 aa13.82□□□□□ -0.2
PTCH1-226ENST00000553011 PCDHB1Q9Y5F3 818 aa13.82□□□□□ -0.2
PTCH1-226ENST00000553011 TEX264Q9Y6I9 313 aa13.82□□□□□ -0.2
PTCH1-226ENST00000553011 FRYQ5TBA9 3013 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 IGHV1OR21-1A0A087WYE8 117 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 ESYT3A0FGR9 886 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 CTAGE15A4D2H0 777 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 D6RAR5 112 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 E7ESA3 106 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 NDC80O14777 642 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 TCEA3O75764 348 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 TTC4O95801 387 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 SLC35G4P0C7Q5 338 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 CTAGE8P0CG41 777 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 MTHFD1P11586 935 aaKnown RBP13.81□□□□□ -0.2
PTCH1-226ENST00000553011 RPS3P23396 243 aaKnown RBP eCLIP13.81□□□□□ -0.2
PTCH1-226ENST00000553011 CD1CP29017 333 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 PDX1P52945 283 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 PLTPP55058 493 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 CTBP1Q13363 440 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 BOP1Q14137 746 aaKnown RBP13.81□□□□□ -0.2
PTCH1-226ENST00000553011 HSP90AA5PQ58FG0 334 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 SPANXN3Q5MJ09 141 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 PTRHD1Q6GMV3 140 aaKnown RBP13.81□□□□□ -0.2
PTCH1-226ENST00000553011 UNC5AQ6ZN44 842 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 TMEM26Q6ZUK4 368 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 USP53Q70EK8 1073 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 TMPRSS9Q7Z410 1059 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 B3GNT8Q7Z7M8 397 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 CTAGE6Q86UF2 777 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 KCNMB4Q86W47 210 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 CTAGE4Q8IX94 777 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 AVL9Q8NBF6 648 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 WDR48Q8TAF3 677 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 ART4Q93070 314 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 LRRC39Q96DD0 335 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 C12orf66Q96MD2 445 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 TCF12Q99081 682 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 NUDT22Q9BRQ3 303 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 NAT9Q9BTE0 207 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 TBC1D10AQ9BXI6 508 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 FOXP3Q9BZS1 431 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 OR52A5Q9H2C5 316 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 RDH14Q9HBH5 336 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 SLC40A1Q9NP59 571 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 IARS2Q9NSE4 1012 aaKnown RBP13.81□□□□□ -0.2
PTCH1-226ENST00000553011 POT1Q9NUX5 634 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 IMP3Q9NV31 184 aaKnown RBP13.81□□□□□ -0.2
PTCH1-226ENST00000553011 ZC3H7BQ9UGR2 993 aaKnown RBP13.81□□□□□ -0.2
PTCH1-226ENST00000553011 GNPTGQ9UJJ9 305 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 CRYL1Q9Y2S2 319 aa13.81□□□□□ -0.2
PTCH1-226ENST00000553011 SNRNP200O75643 2136 aaKnown RBP13.81□□□□□ -0.2
PTCH1-226ENST00000553011 S1PR4O95977 384 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 GSTM1P09488 218 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 ERVK-10P10266 1014 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 FMO4P31512 558 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 CCR7P32248 378 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 CSF2RBP32927 897 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 SLC1A2P43004 574 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 MAPK9P45984 424 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 CSE1LP55060 971 aaKnown RBP13.8□□□□□ -0.2
PTCH1-226ENST00000553011 MPP1Q00013 466 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 GSTM4Q03013 218 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 CAMK2BQ13554 666 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 GPR18Q14330 331 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 ISXQ2M1V0 245 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 MAP9Q49MG5 647 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 CTSL3PQ5NE16 218 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 RNF187Q5TA31 235 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-226ENST00000553011 STEAP4Q687X5 459 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 CAPRIN2Q6IMN6 1127 aaKnown RBP13.8□□□□□ -0.2
PTCH1-226ENST00000553011 ZDHHC24Q6UX98 284 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 LRRC6Q86X45 466 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 CACTIN-AS1Q8N1I8 211 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 FBXO36Q8NEA4 188 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 FBXO25Q8TCJ0 367 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 JPH3Q8WXH2 748 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-226ENST00000553011 SH3KBP1Q96B97 665 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 BIRC8Q96P09 236 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 DEPDC7Q96QD5 511 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 CARD6Q9BX69 1037 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 FBXO6Q9NRD1 293 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-226ENST00000553011 FBXO5Q9UKT4 447 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 ENTPD2Q9Y5L3 495 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 ANKRD11Q6UB99 2663 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-226ENST00000553011 AHCTF1Q8WYP5 2266 aa13.8□□□□□ -0.2
PTCH1-226ENST00000553011 SLC5A10A0PJK1 596 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 LILRA5A6NI73 299 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 F8W8V4 182 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 LIN7AO14910 233 aaPredicted RBP13.79□□□□□ -0.2
PTCH1-226ENST00000553011 PFDN6O15212 129 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 ZW10O43264 779 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 NIPSNAP2O75323 286 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 CPNE6O95741 557 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 PPM1FP49593 454 aaPredicted RBP13.79□□□□□ -0.2
PTCH1-226ENST00000553011 GUCY2DQ02846 1103 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 CFHR1Q03591 330 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms