RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 HSPA8P11142 646 aaKnown RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SRCP12931 536 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 TYRP14679 529 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 OGNP20774 298 aaKnown RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 GPX3P22352 226 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 PRKACGP22612 351 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 RPIAP49247 311 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 GSK3BP49841 420 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 POLR2JP52435 117 aaKnown RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 DNAJB13P59910 316 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 CACNG1Q06432 222 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 PRKG2Q13237 762 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 NFATC2Q13469 925 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 LRP8Q14114 963 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 ADGRE1Q14246 886 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 UGT3A2Q3SY77 523 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 FAM174BQ3ZCQ3 159 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 FOXB2Q5VYV0 432 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 ADNP2Q6IQ32 1131 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 UBE2R2Q712K3 238 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SLC43A3Q8NBI5 491 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 POF1BQ8WVV4 589 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 BADQ92934 168 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 LRRC58Q96CX6 371 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 FAR2Q96K12 515 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 ZFRQ96KR1 1074 aaKnown RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 COPS8Q99627 209 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM175Q9BSA9 504 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 FAM126AQ9BYI3 521 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 TRIM4Q9C037 500 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SUV39H2Q9H5I1 410 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 MEAF6Q9HAF1 191 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 PCDH12Q9NPG4 1184 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 BATF3Q9NR55 127 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 PCTPQ9UKL6 214 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 CNOT6Q9ULM6 557 aaKnown RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 LZTS1Q9Y250 596 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 MYLKQ15746 1914 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 RAD51BO15315 384 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 ABLIM3O94929 683 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 EPOP01588 193 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 TRBC1P01850 177 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SERPIND1P05546 499 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 GNAO1P09471 354 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 HIST1H2AGP0C0S8 130 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 MYCLP1P12525 358 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 HIST1H2ADP20671 130 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 LHCGRP22888 699 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 GRIA2P42262 883 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 PPP3CCP48454 512 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 DGKEP52429 567 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 XIAPP98170 497 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 GTF2H3Q13889 308 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SLC5A9Q2M3M2 681 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 UAP1L1Q3KQV9 507 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 CCSMST1Q4G0I0 132 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SPANXN4Q5MJ08 99 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SAMD4BQ5PRF9 694 aaKnown RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 FAM91A1Q658Y4 838 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 CNKSR3Q6P9H4 555 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 Q6ZSR9 355 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 C11orf96Q7Z7L8 435 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 ITIH5Q86UX2 942 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 STK32CQ86UX6 486 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SLC44A2Q8IWA5 706 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 LIX1Q8N485 282 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 ZBTB2Q8N680 514 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 CPSF7Q8N684 471 aaKnown RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 FAM47BQ8NA70 645 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 OR2AP1Q8NGE2 309 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 JADE3Q92613 823 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 TMIGD2Q96BF3 282 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 FBXL20Q96IG2 436 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 HIST1H2AHQ96KK5 128 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 RANBP9Q96S59 729 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 HIST1H2AJQ99878 128 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 H2AFJQ9BTM1 129 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 RIOK2Q9BVS4 552 aaKnown RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 TTLL2Q9BWV7 592 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 DPY30Q9C005 99 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 DERL2Q9GZP9 239 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 HPS4Q9NQG7 708 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 KIAA1522Q9P206 1035 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 PRKAG2Q9UGJ0 569 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 LIMD1Q9UGP4 676 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 UTS2RQ9UKP6 389 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 CORO1CQ9ULV4 474 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 PLAGL1Q9UM63 463 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 TBC1D30Q9Y2I9 924 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 MRPS23Q9Y3D9 190 aaKnown RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SPEGQ15772 3267 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 A0A0G2JN53 185 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 DHRS12A0PJE2 317 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 MYO1GB0I1T2 1018 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 SOCS2O14508 198 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 LATO43561 262 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 NOBOXO60393 691 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ULK1O75385 1050 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 GMNNO75496 209 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 LEFTY1O75610 366 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms