RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 TUBB2AQ13885 445 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 GALNT3Q14435 633 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 KHDC1Q4VXA5 237 aaKnown RBP10.24□□□□□ -0.77
VPS29-208ENST00000550267 CRB2Q5IJ48 1285 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 DNTTIP2Q5QJE6 756 aaKnown RBP10.24□□□□□ -0.77
VPS29-208ENST00000550267 PLEKHS1Q5SXH7 462 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 VWA5B1Q5TIE3 1220 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 CDKAL1Q5VV42 579 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 FBXO38Q6PIJ6 1188 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 WASH2PQ6VEQ5 465 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 KMT5CQ86Y97 462 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 DSELQ8IZU8 1212 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 TRAM1L1Q8N609 369 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 TMEM102Q8N9M5 508 aaPredicted RBP10.24□□□□□ -0.77
VPS29-208ENST00000550267 INPP5DQ92835 1189 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 SYT11Q9BT88 431 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 TUBB2BQ9BVA1 445 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 NUP85Q9BW27 656 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 KRTAP9-2Q9BYQ4 174 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 NLNQ9BYT8 704 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 ILKAPQ9H0C8 392 aaPredicted RBP10.24□□□□□ -0.77
VPS29-208ENST00000550267 CLSTN2Q9H4D0 955 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 C5AR2Q9P296 337 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 ENTPD4Q9Y227 616 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 B3GNT3Q9Y2A9 372 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 COPG1Q9Y678 874 aaKnown RBP10.24□□□□□ -0.77
VPS29-208ENST00000550267 DOPEY1Q5JWR5 2465 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 CROCCQ5TZA2 2017 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 OR5K3A6NET4 321 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 TLCD2A6NGC4 264 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.23□□□□□ -0.77
VPS29-208ENST00000550267 ANKRD66B4E2M5 251 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 MATN3O15232 486 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 VEGFDO43915 354 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 CDK14O94921 469 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 SLC4A1P02730 911 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 HLA-DQB2P05538 268 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 CAPN1P07384 714 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 FERP16591 822 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 CES1P23141 567 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 CA5AP35218 305 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 HALP42357 657 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 GLRBP48167 497 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 RRADP55042 308 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 GSDMDP57764 484 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 HSD11B2P80365 405 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 GALNT2Q10471 571 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 PLCL1Q15111 1095 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 BOLA3Q53S33 107 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 SP5Q6BEB4 398 aaPredicted RBP10.23□□□□□ -0.77
VPS29-208ENST00000550267 PPP1R2P3Q6NXS1 205 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 KLHL35Q6PF15 583 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 FAM198BQ6UWH4 519 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 IRF2BP2Q7Z5L9 587 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 C11orf96Q7Z7L8 435 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 LRRC49Q8IUZ0 686 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 MCEMP1Q8IX19 187 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 OR8K5Q8NH50 307 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 CLIP3Q96DZ5 547 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 SGSM3Q96HU1 749 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 LRFN5Q96NI6 719 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 CD180Q99467 661 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 ZSCAN5AQ9BUG6 496 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 ZFYVE1Q9HBF4 777 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 MYO1AQ9UBC5 1043 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 TMPRSS11EQ9UL52 423 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 PSMD13Q9UNM6 376 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 SHOC2Q9UQ13 582 aa10.23□□□□□ -0.77
VPS29-208ENST00000550267 GPC6Q9Y625 555 aaPredicted RBP10.23□□□□□ -0.77
VPS29-208ENST00000550267 LRRTM2O43300 516 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 LCA5LO95447 670 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 FTLP02792 175 aaPredicted RBP10.22□□□□□ -0.77
VPS29-208ENST00000550267 MMP2P08253 660 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 CD48P09326 243 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 PIRTP0C851 137 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 OTX2P32243 289 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 RORAP35398 523 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 CD86P42081 329 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 ARCN1P48444 511 aaKnown RBP10.22□□□□□ -0.77
VPS29-208ENST00000550267 DCDC1P59894 354 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 ABRQ12979 859 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 RPE65Q16518 533 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 PTCHD3Q3KNS1 767 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 FAM182AQ5T1J6 154 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 LYPLAL1Q5VWZ2 237 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 HGSNATQ68CP4 663 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 NCBP2-AS2Q69YL0 99 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 PDPK2PQ6A1A2 396 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 TIGD7Q6NT04 549 aaPredicted RBP10.22□□□□□ -0.77
VPS29-208ENST00000550267 TRAPPC5Q8IUR0 188 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 ENOX1Q8TC92 643 aaKnown RBP10.22□□□□□ -0.77
VPS29-208ENST00000550267 UBE2Q2Q8WVN8 375 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 CPT1BQ92523 772 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 PPM1MQ96MI6 270 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 BARD1Q99728 777 aaKnown RBP10.22□□□□□ -0.77
VPS29-208ENST00000550267 TLR10Q9BXR5 811 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 LATS2Q9NRM7 1088 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 TPSG1Q9NRR2 321 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 PCMTD2Q9NV79 361 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 HRASLS2Q9NWW9 162 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms