RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 AREL1O15033 823 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 DLX3O60479 287 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 MMP20O60882 483 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 CBFA2T3O75081 653 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 SLC4A1P02730 911 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 KRT16P08779 473 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 OGNP20774 298 aaKnown RBP11.78□□□□□ -0.52
CLIP1-208ENST00000537004 HNRNPH1P31943 449 aaKnown RBP11.78□□□□□ -0.52
CLIP1-208ENST00000537004 RASSF2P50749 326 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 STC1P52823 247 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 CDKN2DP55273 166 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 RPS21P63220 83 aaKnown RBP11.78□□□□□ -0.52
CLIP1-208ENST00000537004 ILF2Q12905 390 aaKnown RBP11.78□□□□□ -0.52
CLIP1-208ENST00000537004 BNIP3Q12983 259 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 CSHL1Q14406 222 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 ZNF423Q2M1K9 1284 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 FAM83EQ2M2I3 478 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 RALGPS1Q5JS13 557 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 NEK5Q6P3R8 708 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 GCNT7Q6ZNI0 430 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 SDCCAG8Q86SQ7 713 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-208ENST00000537004 MFSD2AQ8NA29 543 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 OR13H1Q8NG92 308 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 SLC7A6OSQ96CW6 309 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-208ENST00000537004 UBXN10Q96LJ8 280 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 WRAP53Q9BUR4 548 aaKnown RBP11.78□□□□□ -0.52
CLIP1-208ENST00000537004 OSBPL1AQ9BXW6 950 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 SUV39H2Q9H5I1 410 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 STN1Q9H668 368 aaKnown RBP11.78□□□□□ -0.52
CLIP1-208ENST00000537004 ARL8BQ9NVJ2 186 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 ARMCX1Q9P291 453 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 PCOLCE2Q9UKZ9 415 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 DMTF1Q9Y222 760 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 ZFHX4Q86UP3 3567 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 IGF2RP11717 2491 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 A0A1B0GTQ1 180 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 AP1G1O43747 822 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 HNRNPCL1O60812 293 aaKnown RBP11.77□□□□□ -0.52
CLIP1-208ENST00000537004 SDC3O75056 442 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 LTA4HP09960 611 aaKnown RBP11.77□□□□□ -0.52
CLIP1-208ENST00000537004 CCDC166P0CW27 439 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 THEGLP0DJG4 465 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 ALOX15P16050 662 aaPredicted RBP11.77□□□□□ -0.52
CLIP1-208ENST00000537004 LPOP22079 712 aaPredicted RBP11.77□□□□□ -0.52
CLIP1-208ENST00000537004 HNRNPA2B1P22626 353 aaKnown RBP11.77□□□□□ -0.52
CLIP1-208ENST00000537004 PSMA3P25788 255 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 PMLP29590 882 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 FOXC1Q12948 553 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 KRT72Q14CN4 511 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 TRIP6Q15654 476 aaKnown RBP11.77□□□□□ -0.52
CLIP1-208ENST00000537004 TYSND1Q2T9J0 566 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 ZNF542PQ5EBM4 170 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 AGAP9Q5VTM2 703 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 FAM91A1Q658Y4 838 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 FAM45BPQ6NSW5 357 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 ZNF549Q6P9A3 640 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 AFTPHQ6ULP2 937 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 MAVSQ7Z434 540 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 SPNS2Q8IVW8 549 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 ZNF781Q8N8C0 355 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 FAM45AQ8TCE6 357 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 RHBDD1Q8TEB9 315 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 PTCD3Q96EY7 689 aaKnown RBP11.77□□□□□ -0.52
CLIP1-208ENST00000537004 BMFQ96LC9 184 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 TUBB6Q9BUF5 446 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 TRPM6Q9BX84 2022 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 CPEB1Q9BZB8 566 aaKnown RBP11.77□□□□□ -0.52
CLIP1-208ENST00000537004 FAM96AQ9H5X1 160 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 DNAJC28Q9NX36 388 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 LNPEPQ9UIQ6 1025 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 CORO1CQ9ULV4 474 aaPredicted RBP11.77□□□□□ -0.52
CLIP1-208ENST00000537004 COQ6Q9Y2Z9 468 aa11.77□□□□□ -0.52
CLIP1-208ENST00000537004 PLXNB3Q9ULL4 1909 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 GOLGA8CPA6NN73 597 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 TRAFD1O14545 582 aaPredicted RBP11.77□□□□□ -0.53
CLIP1-208ENST00000537004 ZNF195O14628 629 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 MGRN1O60291 552 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 CCDC22O60826 627 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 WISP3O95389 354 aaPredicted RBP11.77□□□□□ -0.53
CLIP1-208ENST00000537004 ZNF883P0CG24 379 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 FDXRP22570 491 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 CCT8P50990 548 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 NAGLUP54802 743 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 AP1S1P61966 158 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 TUBB3Q13509 450 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 RCN2Q14257 317 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 TECRLQ5HYJ1 363 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 KLC3Q6P597 504 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 DBX2Q6ZNG2 339 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 PIM3Q86V86 326 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 SLC22A18ASQ8N1D0 253 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 ANKRD49Q8WVL7 239 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 MOCOSQ96EN8 888 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 SGF29Q96ES7 293 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 KLHDC7BQ96G42 594 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 NSL1Q96IY1 281 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 C1QTNF2Q9BXJ5 285 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 DRC3Q9H069 523 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 PCDH12Q9NPG4 1184 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 ACSS2Q9NR19 701 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms