RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TPRG1Q6ZUI0 275 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 DGLUCYQ7Z3D6 616 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 PIWIL4Q7Z3Z4 852 aaKnown RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 GALNT5Q7Z7M9 940 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 KLHDC8BQ8IXV7 354 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 SCYL3Q8IZE3 742 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 CIARTQ8N365 385 aaPredicted RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 GBGT1Q8N5D6 347 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 GCSAMQ8N6F7 178 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 SYT2Q8N9I0 419 aaPredicted RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 KLHDC9Q8NEP7 349 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 PRPF31Q8WWY3 499 aaKnown RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 CNDP2Q96KP4 475 aaKnown RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 PPP1R13BQ96KQ4 1090 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 C17orf77Q96MU5 243 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 DDOQ99489 341 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 TRPC7Q9HCX4 862 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 SCRT2Q9NQ03 307 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP2.63□□□□□ -1.99
CD44-238ENST00000534296 SLC38A7Q9NVC3 462 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 INTS10Q9NVR2 710 aaKnown RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 DDX43Q9NXZ2 648 aaKnown RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 NKIRAS2Q9NYR9 191 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 TAS2R14Q9NYV8 317 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 ZNF624Q9P2J8 865 aaPredicted RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 CFDP1Q9UEE9 299 aaPredicted RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 EXO1Q9UQ84 846 aaKnown RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 TMEM184BQ9Y519 407 aaPredicted RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 YIPF1Q9Y548 306 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 SEC23IPQ9Y6Y8 1000 aaKnown RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 A0A0G2JNG1 304 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 A0A1W2PP11 408 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 hCG_1809904A0A1W2PP81 198 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 A0A1W2PPE2 198 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 A0A1W2PR64 198 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 CTAGE9A4FU28 777 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 CIDEAO60543 219 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 TSPAN1O60635 241 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 ZG16O60844 167 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 RSL1D1O76021 490 aaKnown RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 APOHP02749 345 aaPredicted RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 APOA4P06727 396 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 TPOP07202 933 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 CTAGE8P0CG41 777 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 AKR1B1P15121 316 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 CHRNB4P30926 498 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 LINC01547P58512 204 aaPredicted RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 RPS18P62269 152 aaKnown RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 SNRPEP62304 92 aaKnown RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 KCNJ10P78508 379 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 KIR2DS5Q14953 304 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 TMEM30BQ3MIR4 351 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 RARS2Q5T160 578 aaKnown RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 NDUFAF5Q5TEU4 345 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 NSUN5P2Q63ZY6 315 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 DHRS7BQ6IAN0 325 aaPredicted RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 LCN10Q6JVE6 187 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 SLC30A6Q6NXT4 461 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 PRPF39Q86UA1 669 aaKnown RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 CTAGE4Q8IX94 777 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 OR8H2Q8N162 312 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 AFAP1Q8N556 730 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 SLC38A9Q8NBW4 561 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 HCAR2Q8TDS4 363 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 TRPC4APQ8TEL6 797 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 ZNF473Q8WTR7 871 aaKnown RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 SMPDL3BQ92485 455 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 PTERQ96BW5 349 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 ZNF653Q96CK0 615 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 ZNF501Q96CX3 271 aaPredicted RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 MTERF3Q96E29 417 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 PRMT6Q96LA8 375 aaPredicted RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 CEP295NLQ96MC4 621 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 OR2A14Q96R47 310 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 SRSF8Q9BRL6 282 aaKnown RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 FSD1Q9BTV5 496 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 AP1M1Q9BXS5 423 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 ZNF696Q9H7X3 374 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 APOBEC3GQ9HC16 384 aaKnown RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 PFDN4Q9NQP4 134 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 RCC2Q9P258 522 aaKnown RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 BCCIPQ9P287 314 aaKnown RBP eCLIP2.62□□□□□ -1.99
CD44-238ENST00000534296 AMACRQ9UHK6 382 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 ZNF148Q9UQR1 794 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 PTRH2Q9Y3E5 179 aaKnown RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 C2CD2Q9Y426 696 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 PCDHGA5Q9Y5G8 931 aa2.62□□□□□ -1.99
CD44-238ENST00000534296 MAGED1Q9Y5V3 778 aaPredicted RBP2.62□□□□□ -1.99
CD44-238ENST00000534296 GLOD5A6NK44 160 aa2.61□□□□□ -1.99
CD44-238ENST00000534296 AGAP14A8MT82 685 aa2.61□□□□□ -1.99
CD44-238ENST00000534296 PSMD14O00487 310 aa2.61□□□□□ -1.99
CD44-238ENST00000534296 P4HA2O15460 535 aa2.61□□□□□ -1.99
CD44-238ENST00000534296 NDUFS4O43181 175 aa2.61□□□□□ -1.99
CD44-238ENST00000534296 PRAMEF11O60813 436 aa2.61□□□□□ -1.99
CD44-238ENST00000534296 OR2C1O95371 312 aa2.61□□□□□ -1.99
CD44-238ENST00000534296 PAK4O96013 591 aaPredicted RBP2.61□□□□□ -1.99
CD44-238ENST00000534296 AMBPP02760 352 aa2.61□□□□□ -1.99
CD44-238ENST00000534296 TFAP2AP05549 437 aa2.61□□□□□ -1.99
CD44-238ENST00000534296 LIPFP07098 398 aa2.61□□□□□ -1.99
CD44-238ENST00000534296 HSP90AB1P08238 724 aaKnown RBP2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms