RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 AGAP14A8MT82 685 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 APOC4-APOC2K7ER74 178 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 SGTAO43765 313 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 CPNE3O75131 537 aaKnown RBP11.07□□□□□ -0.64
VPS28-214ENST00000531032 ANXA9O76027 345 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 SRP72O76094 671 aaKnown RBP11.07□□□□□ -0.64
VPS28-214ENST00000531032 ZBTB11O95625 1053 aaPredicted RBP11.07□□□□□ -0.64
VPS28-214ENST00000531032 AGTP01019 485 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 APOC2P02655 101 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 PDGFAP04085 211 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 NTRK1P04629 796 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 PYGMP11217 842 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 LPOP22079 712 aaPredicted RBP11.07□□□□□ -0.64
VPS28-214ENST00000531032 ADRA1AP35348 466 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 ARL4DP49703 201 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 GEMP55040 296 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 TBX2Q13207 712 aaPredicted RBP11.07□□□□□ -0.64
VPS28-214ENST00000531032 TAF1AQ15573 450 aaPredicted RBP11.07□□□□□ -0.64
VPS28-214ENST00000531032 C11orf63Q6NUN7 778 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 DUS1LQ6P1R4 473 aaKnown RBP11.07□□□□□ -0.64
VPS28-214ENST00000531032 RANBP10Q6VN20 620 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 DET1Q7L5Y6 550 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 SYVN1Q86TM6 617 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 CCDC50Q8IVM0 306 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 FAM26EQ8N5C1 309 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 TEX19Q8NA77 164 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 SPDYE1Q8NFV5 336 aaPredicted RBP11.07□□□□□ -0.64
VPS28-214ENST00000531032 OR4K2Q8NGD2 314 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 THAP4Q8WY91 577 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 ZNF501Q96CX3 271 aaPredicted RBP11.07□□□□□ -0.64
VPS28-214ENST00000531032 RBM41Q96IZ5 413 aaKnown RBP11.07□□□□□ -0.64
VPS28-214ENST00000531032 FICDQ9BVA6 458 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 TRIM55Q9BYV6 548 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 LATS2Q9NRM7 1088 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 BTRCQ9Y297 605 aa11.07□□□□□ -0.64
VPS28-214ENST00000531032 USP9XQ93008 2570 aaPredicted RBP11.06□□□□□ -0.64
VPS28-214ENST00000531032 OR6C74A6NCV1 312 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 C5orf60A6NFR6 353 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 C2orf81A6NN90 581 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 SCRG1O75711 98 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 DNAJB5O75953 348 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 LCA5LO95447 670 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 SLC35G4P0C7Q5 338 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 RBL1P28749 1068 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 MAGEA1P43355 309 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 KPNA2P52292 529 aaKnown RBP11.06□□□□□ -0.64
VPS28-214ENST00000531032 RPS18P62269 152 aaKnown RBP11.06□□□□□ -0.64
VPS28-214ENST00000531032 XIAPP98170 497 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 PDE1BQ01064 536 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 GPS2Q13227 327 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 MSLNQ13421 630 aaPredicted RBP11.06□□□□□ -0.64
VPS28-214ENST00000531032 IL10RAQ13651 578 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 GPR19Q15760 415 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 IZUMO3Q5VZ72 239 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 ITPRIPL1Q6GPH6 555 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 CAPRIN2Q6IMN6 1127 aaKnown RBP11.06□□□□□ -0.64
VPS28-214ENST00000531032 FAM199XQ6PEV8 388 aaPredicted RBP11.06□□□□□ -0.64
VPS28-214ENST00000531032 TMEM126BQ8IUX1 230 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 NAT14Q8WUY8 206 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 KRT35Q92764 455 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 RMDN2Q96LZ7 410 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 LRFN5Q96NI6 719 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 C19orf43Q9BQ61 176 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 HEMGNQ9BXL5 484 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 ASB8Q9H765 288 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 C10orf88Q9H8K7 445 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 KCND1Q9NSA2 647 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 FKBPLQ9UIM3 349 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS28-214ENST00000531032 COLEC10Q9Y6Z7 277 aa11.06□□□□□ -0.64
VPS28-214ENST00000531032 USP9YO00507 2555 aaPredicted RBP11.06□□□□□ -0.64
VPS28-214ENST00000531032 H7C0C1 242 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 NDUFS1P28331 727 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 ATP5OP48047 213 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 PRLHRP49683 370 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 ZNF140P52738 457 aaPredicted RBP11.05□□□□□ -0.64
VPS28-214ENST00000531032 MLLT10P55197 1068 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 COPS2P61201 443 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 RPS15P62841 145 aaKnown RBP11.05□□□□□ -0.64
VPS28-214ENST00000531032 OLIG2Q13516 323 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 TMTC4Q5T4D3 741 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 CPZQ66K79 652 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 ARMC6Q6NXE6 501 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 SARM1Q6SZW1 724 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 DAAM2Q86T65 1068 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 ATCAYQ86WG3 371 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 LILRA3Q8N6C8 439 aaPredicted RBP11.05□□□□□ -0.64
VPS28-214ENST00000531032 SLC38A9Q8NBW4 561 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 ACVR1CQ8NER5 493 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 HM13Q8TCT9 377 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 ULK4Q96C45 1275 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 PPM1MQ96MI6 270 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 CCM2Q9BSQ5 444 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 MLXIPLQ9NP71 852 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 LUC7LQ9NQ29 371 aaKnown RBP11.05□□□□□ -0.64
VPS28-214ENST00000531032 SOHLH2Q9NX45 425 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 FAM8A1Q9UBU6 413 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 POMT2Q9UKY4 750 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 FARSAQ9Y285 508 aaKnown RBP11.05□□□□□ -0.64
VPS28-214ENST00000531032 EFR3BQ9Y2G0 817 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms