RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 PABPC1P11940 636 aaKnown RBP11.54□□□□□ -0.56
SYNPO-204ENST00000519664 GCAP28676 217 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 KRT20P35900 424 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 EPS8Q12929 822 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 TAF1AQ15573 450 aaPredicted RBP11.54□□□□□ -0.56
SYNPO-204ENST00000519664 ZNF789Q5FWF6 425 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 PROSER1Q86XN7 944 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 XAGE5Q8WWM1 108 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 IGSF8Q969P0 613 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 CCDC3Q9BQI4 270 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 CCDC106Q9BWC9 280 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 SOX17Q9H6I2 414 aaPredicted RBP11.54□□□□□ -0.56
SYNPO-204ENST00000519664 FANCEQ9HB96 536 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 TMLHEQ9NVH6 421 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 A0A088AWK7 358 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 FPGTO14772 594 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 DIRAS1O95057 198 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 GLUD1P00367 558 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 INHAP05111 366 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 PRSS56P0CW18 603 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 ANXA11P50995 505 aaKnown RBP11.53□□□□□ -0.56
SYNPO-204ENST00000519664 TUBA4AP68366 448 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 LAPTM4AQ15012 233 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 UPP1Q16831 310 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 INTS11Q5TA45 600 aaKnown RBP11.53□□□□□ -0.56
SYNPO-204ENST00000519664 AHSA2Q719I0 299 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 ASRGL1Q7L266 308 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 FAM124AQ86V42 546 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 LRRTM3Q86VH5 581 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 CMTM8Q8IZV2 173 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 TTC9BQ8N6N2 239 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 SLC13A3Q8WWT9 602 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 FBXO10Q9UK96 956 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 ADAMTS6Q9UKP5 1117 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 EFCAB10A6NFE3 127 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 CA12O43570 354 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 SGTAO43765 313 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 ZNF12P17014 697 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 FEN1P39748 380 aaKnown RBP11.53□□□□□ -0.56
SYNPO-204ENST00000519664 DGKEP52429 567 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 TRIM32Q13049 653 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 LAPTM5Q13571 262 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 EIF3MQ7L2H7 374 aaKnown RBP11.53□□□□□ -0.56
SYNPO-204ENST00000519664 THAP5Q7Z6K1 395 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 EPHX4Q8IUS5 362 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 CXorf40AQ8TE69 158 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 CENPIQ92674 756 aaPredicted RBP11.53□□□□□ -0.56
SYNPO-204ENST00000519664 ASB9Q96DX5 294 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 ARHGAP39Q9C0H5 1083 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 KLHL3Q9UH77 587 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 TIAM2Q8IVF5 1701 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 ADAMTSL3P82987 1691 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 A0A0G2JN53 185 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 MYL12BO14950 172 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 GJB5O95377 273 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 H6PDO95479 791 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 OGNP20774 298 aaKnown RBP11.53□□□□□ -0.56
SYNPO-204ENST00000519664 ETV4P43268 484 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 GSK3BP49841 420 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 MANFP55145 182 aaKnown RBP11.53□□□□□ -0.56
SYNPO-204ENST00000519664 MPPE1Q53F39 396 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 ATAD3BQ5T9A4 648 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 RNF19BQ6ZMZ0 732 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 POC5Q8NA72 575 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 OR4A15Q8NGL6 344 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 PPCDCQ96CD2 204 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 CLIP3Q96DZ5 547 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 MCMBPQ9BTE3 642 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 OSBPL6Q9BZF3 934 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 GPR62Q9BZJ7 368 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 EQTNQ9NQ60 294 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 KLHL1Q9NR64 748 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 CTPS2Q9NRF8 586 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 ATP6V1HQ9UI12 483 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 COQ6Q9Y2Z9 468 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 FAM25AB3EWG3 89 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 FAM25CB3EWG5 89 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 FAM25GB3EWG6 89 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 TRIM24O15164 1050 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 HPGDP15428 266 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 IGFBP5P24593 272 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 SLC7A1P30825 629 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 CHRNA6Q15825 494 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 ARMCX4Q5H9R4 360 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 SMYD5Q6GMV2 418 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 PAGE2Q7Z2X7 111 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 AADATQ8N5Z0 425 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 UTP4Q969X6 686 aaKnown RBP11.53□□□□□ -0.56
SYNPO-204ENST00000519664 ROPN1LQ96C74 230 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 MRGPRX2Q96LB1 330 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 TFB2MQ9H5Q4 396 aaKnown RBP11.53□□□□□ -0.56
SYNPO-204ENST00000519664 GIN1Q9NXP7 522 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 GPSM3Q9Y4H4 160 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 TESMINQ9Y4I5 508 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 ACTL7AQ9Y615 435 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 PKD1L3Q7Z443 1732 aa11.53□□□□□ -0.56
SYNPO-204ENST00000519664 ARPC2O15144 300 aa11.52□□□□□ -0.56
SYNPO-204ENST00000519664 ANGPTL1O95841 491 aa11.52□□□□□ -0.56
SYNPO-204ENST00000519664 PRKACGP22612 351 aa11.52□□□□□ -0.56
SYNPO-204ENST00000519664 BUD31P41223 144 aaPredicted RBP11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms