RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 SOX30O94993 753 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 SNX4O95219 450 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 MT-CYBP00156 380 aaPredicted RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 TNFRSF4P43489 277 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 RASGEF1BQ0VAM2 473 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 SIM2Q14190 667 aaPredicted RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 PDK4Q16654 411 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 SLC9B1Q4ZJI4 515 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 PRAMEF14Q5SWL7 426 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 PRAMEF13Q5VWM6 474 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 CXXC5Q7LFL8 322 aaKnown RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 THAP5Q7Z6K1 395 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 CMTM8Q8IZV2 173 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 EXOSC8Q96B26 276 aaKnown RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 TBATAQ96M53 351 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 SMOC2Q9H3U7 446 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 METTL7AQ9H8H3 244 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 XPNPEP1Q9NQW7 623 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 SAMD4AQ9UPU9 718 aaKnown RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 OAS3Q9Y6K5 1087 aaKnown RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 DGKBQ9Y6T7 804 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 C10orf71Q711Q0 1435 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 PEX10O60683 326 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 PTPN4P29074 926 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 OMPP47874 163 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 CLCNKAP51800 687 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 CCNHP51946 323 aaPredicted RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 LRRC36Q1X8D7 754 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 RPAINQ86UA6 219 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 DHRSXQ8N5I4 330 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 DNAJC9Q8WXX5 260 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 MBOAT7Q96N66 472 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 GPER1Q99527 375 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 SMAD5Q99717 465 aaKnown RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 DUSP23Q9BVJ7 150 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 SPRTNQ9H040 489 aaPredicted RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 SP140LQ9H930 580 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 MKKSQ9NPJ1 570 aaPredicted RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 PTGFRNQ9P2B2 879 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 XPR1Q9UBH6 696 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 DKKL1Q9UK85 242 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 POLR1AO95602 1720 aaPredicted RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 ARHGEF28Q8N1W1 1705 aaKnown RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 GRXCR2A6NFK2 248 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 MUSKO15146 869 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 RENP00797 406 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 CA3P07451 260 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 JUNDP17535 347 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 GABRB2P47870 512 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 PREPP48147 710 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 SPIBQ01892 262 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 CSTF1Q05048 431 aaKnown RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 MAPK14Q16539 360 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 SOWAHAQ2M3V2 549 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 FBXO42Q6P3S6 717 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 ZNF730Q6ZMV8 503 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 IKBIPQ70UQ0 350 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 BTN2A1Q7KYR7 527 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 HDDC2Q7Z4H3 204 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 DEFB107AQ8IZN7 70 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 OR2T3Q8NH03 318 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 CKAP2Q8WWK9 683 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 LACRTQ9GZZ8 138 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 ADAM7Q9H2U9 754 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 SEMA4AQ9H3S1 761 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 PIGUQ9H490 435 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 EQTNQ9NQ60 294 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 EIF2B3Q9NR50 452 aaKnown RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 COPG2Q9UBF2 871 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 FKBPLQ9UIM3 349 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 SOCS5O75159 536 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 ZNF865P0CJ78 1059 aaPredicted RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 ARHGDIBP52566 201 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 TMEM44Q2T9K0 475 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 ZNF805Q5CZA5 627 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 MS4A13Q5J8X5 152 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 TRIQKQ629K1 86 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 GCNT7Q6ZNI0 430 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 CAND1Q86VP6 1230 aaKnown RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 FBXO30Q8TB52 745 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 APOLD1Q96LR9 279 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 Q9N2J8 555 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 SNX15Q9NRS6 342 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 LYARQ9NX58 379 aaKnown RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 MOCS1Q9NZB8 636 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 A8MUI8 341 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 E2F3O00716 465 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 PDPK1O15530 556 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 PAPSS1O43252 624 aaPredicted RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 DNAJA2O60884 412 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 SLC22A3O75751 556 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 TRAPPC6AO75865 159 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 ZSCAN5DPP0CG00 497 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 HSMCR30P0CW71 290 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 LMO2P25791 158 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 PTX3P26022 381 aaPredicted RBP4.19□□□□□ -1.74
VCAN-209ENST00000513016 PCYT1AP49585 367 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 RAB28P51157 221 aa4.19□□□□□ -1.74
VCAN-209ENST00000513016 RAB14P61106 215 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms