RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 COL6A1P12109 1028 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 MYCLP1P12525 358 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 CORO1AP31146 461 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 GGT5P36269 586 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 FAM43BQ6ZT52 329 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 EIF3MQ7L2H7 374 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 CENPSQ8N2Z9 138 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 PNPLA1Q8N8W4 532 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 EEF1AKMT1Q8WVE0 214 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 REPS1Q96D71 796 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 TOR3AQ9H497 397 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 ZDHHC6Q9H6R6 413 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 TRMT13Q9NUP7 481 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 CLN6Q9NWW5 311 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 MARCH4Q9P2E8 410 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 TRPC4Q9UBN4 977 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 NUMBLQ9Y6R0 609 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 NME4O00746 187 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 AURKAO14965 403 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 FFAR2O15552 330 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 ABCB7O75027 752 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 CLPXO76031 633 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 F2P00734 622 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 JUNP05412 331 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 URODP06132 367 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 RPIAP49247 311 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 AGTR2P50052 363 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 RPS14P62263 151 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 MED22Q15528 200 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 SULT1C3Q6IMI6 304 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 ERICH5Q6P6B1 374 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 R3HCC1LQ7Z5L2 792 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 CMTR2Q8IYT2 770 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 UBASH3BQ8TF42 649 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 TSPEARQ8WU66 669 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 PHF10Q8WUB8 498 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 IMP4Q96G21 291 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 RANBP9Q96S59 729 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 ANKRD60Q9BZ19 345 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 GTF2IRD1Q9UHL9 959 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 RAPGEFL1Q9UHV5 662 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 CORO2BQ9UQ03 480 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 TNRC6CQ9HCJ0 1690 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 SH3PXD2BA1X283 911 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 MANSC4A6NHS7 340 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 GPR32O75388 356 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 C8BP07358 591 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 ITGA2P17301 1181 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 SH3BP2P78314 561 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 SREBF2Q12772 1141 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 NPTX1Q15818 432 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 ZNF789Q5FWF6 425 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 VARS2Q5ST30 1063 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 DENND5AQ6IQ26 1287 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 TRMT11Q7Z4G4 463 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 TMEM199Q8N511 208 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 HJURPQ8NCD3 748 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 ZNF597Q96LX8 424 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 DEPDC7Q96QD5 511 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 KAT8Q9H7Z6 458 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 SMURF2Q9HAU4 748 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 WDR6Q9NNW5 1121 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 EXD2Q9NVH0 621 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 KCTD5Q9NXV2 234 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 VPS4AQ9UN37 437 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 AIREO43918 545 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 NBNO60934 754 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 ENO2P09104 434 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 CDK4P11802 303 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 ARSDP51689 593 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 TXNL4AP83876 142 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 ABRQ12979 859 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 C11orf91Q3C1V1 193 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 MS4A13Q5J8X5 152 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 DOK6Q6PKX4 331 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 ZBTB8BQ8NAP8 495 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 ANKRD49Q8WVL7 239 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 STON2Q8WXE9 905 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 ATL1Q8WXF7 558 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 MRPL9Q9BYD2 267 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 AHSPQ9NZD4 102 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 EVLQ9UI08 416 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 MAPRE3Q9UPY8 281 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 CEPT1Q9Y6K0 416 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 LOC100130705A0A1B0GUX0 176 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 TAF4O00268 1085 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 TRBC1P01850 177 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 CYP11A1P05108 521 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 PRKACGP22612 351 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 RFC2P35250 354 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 SNRPD1P62314 119 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 ELP6Q0PNE2 266 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 TUBA3CQ13748 450 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 ALFQ53S48 1182 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 C6orf136Q5SQH8 315 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 CPTPQ5TA50 214 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 TRIQKQ629K1 86 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 BLOC1S3Q6QNY0 202 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 PRR23BQ6ZRT6 265 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms