RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 HEATR9A2RTY3 570 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CCNT2O60583 730 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CBFA2T3O75081 653 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 FGF1P05230 155 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CTSLP07711 333 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 ELFN1P0C7U0 828 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 PGAM1P18669 254 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 HMOX2P30519 316 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 BCAP31P51572 246 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 AP1S1P61966 158 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 DAB2P98082 770 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 ITGA9Q13797 1035 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 ZNF460Q14592 562 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 RFTN1Q14699 578 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 ZIK1Q3SY52 487 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 SPDYAQ5MJ70 313 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 LRRC66Q68CR7 880 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 RNF111Q6ZNA4 994 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 Q6ZVL8 140 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 USP45Q70EL2 814 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 RD3Q7Z3Z2 195 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 ZNF557Q8N988 423 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 MCUQ8NE86 351 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 ATP6V1E2Q96A05 226 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 C12orf43Q96C57 262 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CERS2Q96G23 380 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 PLEKHA8Q96JA3 519 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CCDC138Q96M89 665 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 SLC2A11Q9BYW1 496 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 PCDHAC1Q9H158 963 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CCDC68Q9H2F9 335 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 FZD3Q9NPG1 666 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 TIMMDC1Q9NPL8 285 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 FBXL12Q9NXK8 326 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CRLS1Q9UJA2 301 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 GPSM3Q9Y4H4 160 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 ARIH1Q9Y4X5 557 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 TEX264Q9Y6I9 313 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 MIA3Q5JRA6 1907 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 C16orf96A6NNT2 1141 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 PDLIM1O00151 329 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CCRL2O00421 344 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 ITM2AO43736 263 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 DNAJA2O60884 412 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CNOT3O75175 753 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 KRT37O76014 449 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 DNTTP04053 509 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 PAMP19021 973 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 HLA-DPA1P20036 260 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 MC4RP32245 332 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 RAD23AP54725 363 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 MYBPC1Q00872 1141 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 TGFBIQ15582 683 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 RANBP10Q6VN20 620 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 ZNF783Q6ZMS7 281 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 FRMD7Q6ZUT3 714 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CMC1Q7Z7K0 106 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 GATAD2AQ86YP4 633 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CCNYL1Q8N7R7 359 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 MDGA1Q8NFP4 955 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 SLC35B4Q969S0 331 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 SGF29Q96ES7 293 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 ELMO2Q96JJ3 720 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 TMEM109Q9BVC6 243 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 MKRN2Q9H000 416 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CASS4Q9NQ75 786 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 SENP1Q9P0U3 644 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CIDEBQ9UHD4 219 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 HS3ST2Q9Y278 367 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 DOCK9Q9BZ29 2069 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 COL4A3Q01955 1670 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 TRPM6Q9BX84 2022 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CCDC162PA2VCL2 907 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 ERI2A8K979 691 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 C9JVG2 144 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 PHGDHO43175 533 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 PGLSO95336 258 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 ETV3P41162 512 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 GLRBP48167 497 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 NPY2RP49146 381 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 DGKEP52429 567 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 NUP107P57740 925 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 CCNIQ14094 377 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 INAQ16352 499 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 UGP2Q16851 508 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 GAB4Q2WGN9 574 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 FASTKD1Q53R41 847 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 OTUD3Q5T2D3 398 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 ZBTB49Q6ZSB9 765 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 TEX26Q8N6G2 289 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 SIPA1Q96FS4 1042 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 MRGPRX3Q96LB0 322 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 TPK1Q9H3S4 243 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 ASB8Q9H765 288 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 TCAF1Q9Y4C2 921 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 DNAH14Q0VDD8 3507 aa8.56□□□□□ -1.04
LIMCH1-209ENST00000509277 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 A0A088AWK7 358 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms