RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 MMP12P39900 470 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 PSMC4P43686 418 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 HLCSP50747 726 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 CCR5P51681 352 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 GSCP56915 257 aaPredicted RBP2.33□□□□□ -2.04
NUP54-208ENST00000508604 PAX8Q06710 450 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 NFATC2Q13469 925 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 SEL1L3Q68CR1 1132 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 CRYBG2Q8N1P7 616 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 FGFRL1Q8N441 504 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 MARVELD2Q8N4S9 558 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 SAMD3Q8N6K7 520 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 PRSS33Q8NF86 280 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 OR5AP2Q8NGF4 316 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 ZFAND2BQ8WV99 257 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 SMARCE1Q969G3 411 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 EPB41L5Q9HCM4 733 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 SOS1Q07889 1333 aaPredicted RBP2.32□□□□□ -2.04
NUP54-208ENST00000508604 A0A1W2PQM1 296 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 MEX3AA1L020 520 aaKnown RBP2.32□□□□□ -2.04
NUP54-208ENST00000508604 DAB1O75553 588 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 PIGNO95427 931 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 HPRP00739 348 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 HMGB1P09429 215 aaKnown RBP2.32□□□□□ -2.04
NUP54-208ENST00000508604 HRH2P25021 359 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 KCNC3Q14003 757 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 C15orf32Q32M92 178 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 FAM166AQ6J272 317 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 CORO6Q6QEF8 472 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 MARCH9Q86YJ5 346 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 TICAM1Q8IUC6 712 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 OR1J1Q8NGS3 322 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 ZNF519Q8TB69 540 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 HERVK_113Q902F9 699 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 MPHOSPH6Q99547 160 aaKnown RBP2.32□□□□□ -2.04
NUP54-208ENST00000508604 PPP1R3CQ9UQK1 317 aa2.32□□□□□ -2.04
NUP54-208ENST00000508604 A0A1W2PRG0 241 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 MED19A0JLT2 244 aaPredicted RBP2.31□□□□□ -2.04
NUP54-208ENST00000508604 TRA2BP62995 288 aaKnown RBP2.31□□□□□ -2.04
NUP54-208ENST00000508604 DLK1P80370 383 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 PRKCZQ05513 592 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 GALNT2Q10471 571 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 TAF12Q16514 161 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 DCAF10Q5QP82 559 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 CDC73Q6P1J9 531 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 RAPH1Q70E73 1250 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 LACC1Q8IV20 430 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 KBTBD8Q8NFY9 601 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 GSDMBQ8TAX9 411 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 TRAF4Q9BUZ4 470 aaPredicted RBP2.31□□□□□ -2.04
NUP54-208ENST00000508604 RTN4RQ9BZR6 473 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 ABCB10Q9NRK6 738 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 ABI3Q9P2A4 366 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 FBXL17Q9UF56 701 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 DBNLQ9UJU6 430 aaKnown RBP2.31□□□□□ -2.04
NUP54-208ENST00000508604 MKLN1Q9UL63 735 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 B3GALT5Q9Y2C3 310 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 ABCA7Q8IZY2 2146 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 A0A1W2PPR1 153 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 EPM2AB3EWF7 344 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 J3QR06 171 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 MAGEC1O60732 1142 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 TMCC2O75069 709 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 ZNF217O75362 1048 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 PRKRAO75569 313 aaKnown RBP2.31□□□□□ -2.04
NUP54-208ENST00000508604 IPO7O95373 1038 aaKnown RBP2.31□□□□□ -2.04
NUP54-208ENST00000508604 GCNT3O95395 438 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 EFNA1P20827 205 aaPredicted RBP2.31□□□□□ -2.04
NUP54-208ENST00000508604 RARSP54136 660 aaKnown RBP2.31□□□□□ -2.04
NUP54-208ENST00000508604 TFAP4Q01664 338 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 UBE4AQ14139 1066 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 MVPQ14764 893 aaKnown RBP2.31□□□□□ -2.04
NUP54-208ENST00000508604 NAB2Q15742 525 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 ADIPOQQ15848 244 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 MEP1AQ16819 746 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 DPCR1Q3MIW9 517 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 FAM69AQ5T7M9 428 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 TPRG1Q6ZUI0 275 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 PTAR1Q7Z6K3 402 aaPredicted RBP2.31□□□□□ -2.04
NUP54-208ENST00000508604 PIGZQ86VD9 579 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 KCNMB4Q86W47 210 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 DCLK2Q8N568 766 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 C17orf47Q8NEP4 570 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 OR4C3Q8NH37 302 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 OR8K5Q8NH50 307 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 SGCDQ92629 289 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 RANGRFQ9HD47 186 aaPredicted RBP2.31□□□□□ -2.04
NUP54-208ENST00000508604 SPHK2Q9NRA0 654 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 TEX10Q9NXF1 929 aaPredicted RBP2.31□□□□□ -2.04
NUP54-208ENST00000508604 TAB2Q9NYJ8 693 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 CNOT8Q9UFF9 292 aaKnown RBP2.31□□□□□ -2.04
NUP54-208ENST00000508604 R3HDM2Q9Y2K5 976 aaKnown RBP2.31□□□□□ -2.04
NUP54-208ENST00000508604 CAPN7Q9Y6W3 813 aa2.31□□□□□ -2.04
NUP54-208ENST00000508604 A0A1W2PN81 502 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 A0A1W2PRB8 838 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 ASB14A6NK59 587 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 TMEM189-UBE2V1I3L0A0 370 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 PLPP2O43688 288 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 HNRNPA1P09651 372 aaKnown RBP eCLIP2.3□□□□□ -2.04
NUP54-208ENST00000508604 CHRNA7P36544 502 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms