RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 FBXO6Q9NRD1 293 aaPredicted RBP9.87□□□□□ -0.83
NUP54-203ENST00000504173 INTS10Q9NVR2 710 aaKnown RBP9.87□□□□□ -0.83
NUP54-203ENST00000504173 TRNAU1APQ9NX07 287 aaKnown RBP9.87□□□□□ -0.83
NUP54-203ENST00000504173 TOR4AQ9NXH8 423 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 MOCS1Q9NZB8 636 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 ZFATQ9P243 1243 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 PCOLCE2Q9UKZ9 415 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 DOLKQ9UPQ8 538 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 PCYT1BQ9Y5K3 369 aaPredicted RBP9.87□□□□□ -0.83
NUP54-203ENST00000504173 PRSS21Q9Y6M0 314 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 LRP4O75096 1905 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 TDRD6O60522 2096 aaKnown RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 NEMP2A6NFY4 417 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 FFAR2O15552 330 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 AQP9O43315 295 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 TLX3O43711 291 aaPredicted RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 SGTAO43765 313 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 POP7O75817 140 aaKnown RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 CELA2BP08218 269 aaPredicted RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 F7P08709 466 aaPredicted RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 OR56A5P0C7T3 313 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 ZNF883P0CG24 379 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 VCLP18206 1134 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 DGKAP23743 735 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 AK4P27144 223 aaPredicted RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 FMO4P31512 558 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 PMS2P54278 862 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 LRP8Q14114 963 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 NAA30Q147X3 362 aaPredicted RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 SUZ12Q15022 739 aaKnown RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 INAVAQ3KP66 663 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 ZNF789Q5FWF6 425 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 TEDDM1Q5T9Z0 273 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 PTRHD1Q6GMV3 140 aaKnown RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 WDR93Q6P2C0 686 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 ZNF449Q6P9G9 518 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 KIAA0408Q6ZU52 694 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 TRMT10CQ7L0Y3 403 aaKnown RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 TAF8Q7Z7C8 310 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 LRRC6Q86X45 466 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 GKN2Q86XP6 184 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 ZNF547Q8IVP9 402 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 CNTN4Q8IWV2 1026 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 CTAGE3PQ8IX95 158 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 BEND7Q8N7W2 519 aaPredicted RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 C2CD4AQ8NCU7 369 aaPredicted RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 CCL4L1Q8NHW4 92 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 SNIP1Q8TAD8 396 aaKnown RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 BAHD1Q8TBE0 780 aaPredicted RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 SAP25Q8TEE9 199 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 FBF1Q8TES7 1133 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 LPGAT1Q92604 370 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 TIMM29Q9BSF4 260 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 TSSK1BQ9BXA7 367 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 PARD6BQ9BYG5 372 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 CCDC68Q9H2F9 335 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 OSGEPL1Q9H4B0 414 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 UCKL1Q9NWZ5 548 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 NSMCE4AQ9NXX6 385 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 SLC17A6Q9P2U8 582 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 GNPTGQ9UJJ9 305 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 GPR34Q9UPC5 381 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 KCNK6Q9Y257 313 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 DNAJC16Q9Y2G8 782 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 CRYL1Q9Y2S2 319 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 PLEKHM1Q9Y4G2 1056 aa9.86□□□□□ -0.83
NUP54-203ENST00000504173 DNMT3AQ9Y6K1 912 aaPredicted RBP9.86□□□□□ -0.83
NUP54-203ENST00000504173 AHCTF1Q8WYP5 2266 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 MGAT4DA6NG13 374 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 PCDHGA12O60330 932 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 S1PR4O95977 384 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 FTH1P02794 183 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 ESR1P03372 595 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 TUBBP07437 444 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 ANXA6P08133 673 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 ALPPL2P10696 532 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 ITGB6P18564 788 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 RPS3P23396 243 aaKnown RBP eCLIP9.85□□□□□ -0.83
NUP54-203ENST00000504173 ACTR1BP42025 376 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 ACTR1AP61163 376 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 CTBSQ01459 385 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 UBAP2Q5T6F2 1119 aaKnown RBP9.85□□□□□ -0.83
NUP54-203ENST00000504173 CNSTQ6PJW8 725 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 SLC30A9Q6PML9 568 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 CYS1Q717R9 158 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 C11orf96Q7Z7L8 435 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 AMZ2Q86W34 360 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 SLC26A11Q86WA9 606 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 SDR16C5Q8N3Y7 309 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 HM13Q8TCT9 377 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 GPBAR1Q8TDU6 330 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 NXPE2Q96DL1 559 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 LINC00615Q96LM1 132 aaPredicted RBP9.85□□□□□ -0.83
NUP54-203ENST00000504173 CCM2Q9BSQ5 444 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 TXLNGYQ9BZA5 131 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 P2RY12Q9H244 342 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 KLC4Q9NSK0 619 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 TXNDC16Q9P2K2 825 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 FAM8A1Q9UBU6 413 aa9.85□□□□□ -0.83
NUP54-203ENST00000504173 PCDHB1Q9Y5F3 818 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms