RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 K7EM74 188 aa4□□□□□ -1.77
USP54-217ENST00000498213 MAPK13O15264 365 aa4□□□□□ -1.77
USP54-217ENST00000498213 STX6O43752 255 aa4□□□□□ -1.77
USP54-217ENST00000498213 EXOC3O60645 756 aa4□□□□□ -1.77
USP54-217ENST00000498213 TULP3O75386 442 aa4□□□□□ -1.77
USP54-217ENST00000498213 HARSP12081 509 aaKnown RBP4□□□□□ -1.77
USP54-217ENST00000498213 MPGP29372 298 aa4□□□□□ -1.77
USP54-217ENST00000498213 ATP5C1P36542 298 aaKnown RBP4□□□□□ -1.77
USP54-217ENST00000498213 GNL1P36915 607 aaPredicted RBP4□□□□□ -1.77
USP54-217ENST00000498213 SLC8A3P57103 927 aa4□□□□□ -1.77
USP54-217ENST00000498213 TNNC1P63316 161 aa4□□□□□ -1.77
USP54-217ENST00000498213 HOXA4Q00056 320 aaPredicted RBP4□□□□□ -1.77
USP54-217ENST00000498213 TFAMQ00059 246 aaKnown RBP4□□□□□ -1.77
USP54-217ENST00000498213 CCDC15Q0P6D6 951 aa4□□□□□ -1.77
USP54-217ENST00000498213 CTBP1Q13363 440 aa4□□□□□ -1.77
USP54-217ENST00000498213 PSMD6Q15008 389 aa4□□□□□ -1.77
USP54-217ENST00000498213 MLC1Q15049 377 aa4□□□□□ -1.77
USP54-217ENST00000498213 SOWAHAQ2M3V2 549 aa4□□□□□ -1.77
USP54-217ENST00000498213 LACTB2Q53H82 288 aaPredicted RBP4□□□□□ -1.77
USP54-217ENST00000498213 ATL3Q6DD88 541 aa4□□□□□ -1.77
USP54-217ENST00000498213 RHBDF2Q6PJF5 856 aa4□□□□□ -1.77
USP54-217ENST00000498213 CRELD2Q6UXH1 353 aaPredicted RBP4□□□□□ -1.77
USP54-217ENST00000498213 Q6ZWC4 215 aa4□□□□□ -1.77
USP54-217ENST00000498213 CAND1Q86VP6 1230 aaKnown RBP4□□□□□ -1.77
USP54-217ENST00000498213 CNGA4Q8IV77 575 aa4□□□□□ -1.77
USP54-217ENST00000498213 SYCP3Q8IZU3 236 aa4□□□□□ -1.77
USP54-217ENST00000498213 CRYBG2Q8N1P7 616 aa4□□□□□ -1.77
USP54-217ENST00000498213 SCML4Q8N228 414 aa4□□□□□ -1.77
USP54-217ENST00000498213 CPXM2Q8N436 756 aa4□□□□□ -1.77
USP54-217ENST00000498213 ARL14EPQ8N8R7 260 aaPredicted RBP4□□□□□ -1.77
USP54-217ENST00000498213 NECAB1Q8N987 351 aa4□□□□□ -1.77
USP54-217ENST00000498213 MAPK15Q8TD08 544 aa4□□□□□ -1.77
USP54-217ENST00000498213 WFIKKN2Q8TEU8 576 aa4□□□□□ -1.77
USP54-217ENST00000498213 SCFD1Q8WVM8 642 aa4□□□□□ -1.77
USP54-217ENST00000498213 BIRC7Q96CA5 298 aa4□□□□□ -1.77
USP54-217ENST00000498213 REPS1Q96D71 796 aa4□□□□□ -1.77
USP54-217ENST00000498213 PCED1BQ96HM7 432 aa4□□□□□ -1.77
USP54-217ENST00000498213 NT5C1BQ96P26 610 aa4□□□□□ -1.77
USP54-217ENST00000498213 PPP1R9BQ96SB3 815 aa4□□□□□ -1.77
USP54-217ENST00000498213 TRIM62Q9BVG3 475 aa4□□□□□ -1.77
USP54-217ENST00000498213 B3GNT5Q9BYG0 378 aa4□□□□□ -1.77
USP54-217ENST00000498213 SNX25Q9H3E2 840 aa4□□□□□ -1.77
USP54-217ENST00000498213 ZSCAN16Q9H4T2 348 aaPredicted RBP4□□□□□ -1.77
USP54-217ENST00000498213 ERVMER34-1Q9H9K5 563 aa4□□□□□ -1.77
USP54-217ENST00000498213 UPF2Q9HAU5 1272 aaKnown RBP4□□□□□ -1.77
USP54-217ENST00000498213 CYP3A43Q9HB55 503 aa4□□□□□ -1.77
USP54-217ENST00000498213 USP29Q9HBJ7 922 aa4□□□□□ -1.77
USP54-217ENST00000498213 SPHK2Q9NRA0 654 aa4□□□□□ -1.77
USP54-217ENST00000498213 BLOC1S4Q9NUP1 217 aa4□□□□□ -1.77
USP54-217ENST00000498213 GTF3C4Q9UKN8 822 aa4□□□□□ -1.77
USP54-217ENST00000498213 PHTF1Q9UMS5 762 aa4□□□□□ -1.77
USP54-217ENST00000498213 SRPRBQ9Y5M8 271 aaKnown RBP4□□□□□ -1.77
USP54-217ENST00000498213 MYO16Q9Y6X6 1858 aa4□□□□□ -1.77
USP54-217ENST00000498213 KIAA1549LQ6ZVL6 1849 aa4□□□□□ -1.77
USP54-217ENST00000498213 PLXND1Q9Y4D7 1925 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 TACC2O95359 2948 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 CXorf51AA0A1B0GTR3 108 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 TCP11X1B4DZS4 312 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 FAM227AF5H4B4 570 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 CASC3O15234 703 aaKnown RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 IRAK2O43187 625 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 TSPAN3O60637 253 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 PENKP01210 267 aaPredicted RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 S100BP04271 92 aaPredicted RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 MBL2P11226 248 aaPredicted RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 RALAP11233 206 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 HGFP14210 728 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 CYP2F1P24903 491 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 PRKAR1BP31321 381 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 GTF2H1P32780 548 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 ACSL1P33121 698 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 HARS2P49590 506 aaKnown RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 ACOT2P49753 483 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 SUMO2P61956 95 aaKnown RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 LTBQ06643 244 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 TAF10Q12962 218 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 TRPC3Q13507 836 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 IL17AQ16552 155 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 SNRNP35Q16560 246 aaKnown RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 SGSM1Q2NKQ1 1148 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 FUT11Q495W5 492 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 TTC31Q49AM3 519 aaPredicted RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 MINDY4Q4G0A6 757 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 SLC45A4Q5BKX6 768 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 CERCAMQ5T4B2 595 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 CACHD1Q5VU97 1274 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 SFMBT2Q5VUG0 894 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 SDHAF4Q5VUM1 108 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 RRAGBQ5VZM2 374 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 ZNF626Q68DY1 528 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 CXorf57Q6NSI4 855 aaKnown RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 SLC39A4Q6P5W5 647 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 CRTC1Q6UUV9 634 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 NPNTQ6UXI9 565 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 EPM2AIP1Q7L775 607 aaPredicted RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 YTHDF3Q7Z739 585 aaKnown RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 IQCHQ86VS3 1027 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 ZFAND4Q86XD8 727 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 GAS2L3Q86XJ1 694 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 FAM217AQ8IXS0 508 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms