RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TMEM11P17152 192 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 HOXC9P31274 260 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 UBA7P41226 1012 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 PIK3CAP42336 1068 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 PRCPP42785 496 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 SLC6A12P48065 614 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 CLNS1AP54105 237 aaKnown RBP3.39□□□□□ -1.87
VPS50-219ENST00000495039 GALCP54803 685 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 ZBED6P86452 979 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 TFAP4Q01664 338 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 LMOD3Q0VAK6 560 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 KIR2DS5Q14953 304 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 ADIPOQQ15848 244 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 TMEM154Q6P9G4 183 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 GLDNQ6ZMI3 551 aaPredicted RBP3.39□□□□□ -1.87
VPS50-219ENST00000495039 DPPA4Q7L190 304 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 TTC39CQ8N584 583 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 APBB2Q92870 758 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 PPP1R13BQ96KQ4 1090 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 SEPT5Q99719 369 aaPredicted RBP3.39□□□□□ -1.87
VPS50-219ENST00000495039 TRPC7Q9HCX4 862 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 ZNF71Q9NQZ8 489 aaPredicted RBP3.39□□□□□ -1.87
VPS50-219ENST00000495039 TBC1D22BQ9NU19 505 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 R3HDM2Q9Y2K5 976 aaKnown RBP3.39□□□□□ -1.87
VPS50-219ENST00000495039 FRMD3A2A2Y4 597 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 PTGES3LE9PB15 166 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 TMEM178BH3BS89 294 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 ANKRD28O15084 1053 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 SLC22A2O15244 555 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 HCRTR2O43614 444 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 PTP4A3O75365 173 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 NADKO95544 446 aaPredicted RBP3.38□□□□□ -1.87
VPS50-219ENST00000495039 TRIM49P0CI25 452 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 TRIM49CP0CI26 452 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 PEX6Q13608 980 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 GTDC1Q4AE62 458 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 CDONQ4KMG0 1287 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 GKAP1Q5VSY0 366 aaPredicted RBP3.38□□□□□ -1.87
VPS50-219ENST00000495039 ALS2CLQ60I27 953 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 ITPRIPL1Q6GPH6 555 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 PLXDC2Q6UX71 529 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 PACS1Q6VY07 963 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 TICAM1Q8IUC6 712 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 TEX11Q8IYF3 940 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 RNF168Q8IYW5 571 aaPredicted RBP3.38□□□□□ -1.87
VPS50-219ENST00000495039 WDTC1Q8N5D0 677 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 ZNF611Q8N823 705 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 OXNAD1Q96HP4 312 aaPredicted RBP3.38□□□□□ -1.87
VPS50-219ENST00000495039 C1orf74Q96LT6 269 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 BARD1Q99728 777 aaKnown RBP3.38□□□□□ -1.87
VPS50-219ENST00000495039 TREX2Q9BQ50 279 aaPredicted RBP3.38□□□□□ -1.87
VPS50-219ENST00000495039 SMARCAD1Q9H4L7 1026 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 LTB4R2Q9NPC1 389 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 CWC15Q9P013 229 aaKnown RBP3.38□□□□□ -1.87
VPS50-219ENST00000495039 OR14J1Q9UGF5 321 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 KLK13Q9UKR3 277 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 FLT1P17948 1338 aa3.38□□□□□ -1.87
VPS50-219ENST00000495039 FSD2A1L4K1 749 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 ANKRD18BA2A2Z9 1011 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 FAM90A26D6RGX4 464 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 M0QZ24 198 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 KCNN4O15554 427 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 PI15O43692 258 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 DOK2O60496 412 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 GPC4O75487 556 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 MOCS3O95396 460 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 LIFP15018 202 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 UBA1P22314 1058 aaKnown RBP3.37□□□□□ -1.87
VPS50-219ENST00000495039 APOBEC1P41238 236 aaKnown RBP3.37□□□□□ -1.87
VPS50-219ENST00000495039 CASP2P42575 452 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 LRMPQ12912 555 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 MAD2L1Q13257 205 aaPredicted RBP3.37□□□□□ -1.87
VPS50-219ENST00000495039 MZT2BQ6NZ67 158 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 SEPT14Q6ZU15 432 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 PRMT6Q96LA8 375 aaPredicted RBP3.37□□□□□ -1.87
VPS50-219ENST00000495039 SDF4Q9BRK5 362 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 SYNCQ9H7C4 482 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 APOBEC3GQ9HC16 384 aaKnown RBP3.37□□□□□ -1.87
VPS50-219ENST00000495039 SLC38A7Q9NVC3 462 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 SESN1Q9Y6P5 492 aa3.37□□□□□ -1.87
VPS50-219ENST00000495039 ZNF318Q5VUA4 2279 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 A0A1W2PP11 408 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 A6NCN8 305 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 H3BQ06 376 aaPredicted RBP3.36□□□□□ -1.87
VPS50-219ENST00000495039 PLOD2O00469 737 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 ATP2A1O14983 1001 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 HS6ST1O60243 411 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 DAB1O75553 588 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 HIST1H2ABP04908 130 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 CLTBP09497 229 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 HIST1H2ADP20671 130 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 HADHAP40939 763 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 WNT5AP41221 380 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 CDH8P55286 799 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 SNX16P57768 344 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 TAS2R40P59535 323 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 PNLIPRP3Q17RR3 467 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 CTU2Q2VPK5 515 aaKnown RBP3.36□□□□□ -1.87
VPS50-219ENST00000495039 SOWAHCQ53LP3 525 aaPredicted RBP3.36□□□□□ -1.87
VPS50-219ENST00000495039 LRIF1Q5T3J3 769 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms