RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 BMXP51813 675 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC7A2P52569 658 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 IL2P60568 153 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GK3PQ14409 553 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 DMC1Q14565 340 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PLA2G4EQ3MJ16 856 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LIPMQ5VYY2 423 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC39A5Q6ZMH5 540 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TRAPPC5Q8IUR0 188 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 BADQ92934 168 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CASD1Q96PB1 797 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 THUMPD3Q9BV44 507 aaKnown RBP10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PSME2Q9UL46 239 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PCDHGA3Q9Y5H0 932 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PNMA8CA0A1B0GUJ8 204 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 A8MU76 341 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KLF11O14901 512 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 DLX3O60479 287 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 OAZ2O95190 189 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LRATO95237 230 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 IGSF6O95976 241 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HLA-EP13747 358 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FNDC3BQ53EP0 1204 aaKnown RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CYP2U1Q7Z449 544 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TRMT11Q7Z4G4 463 aaKnown RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FAM124AQ86V42 546 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC44A2Q8IWA5 706 aaPredicted RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ARHGAP12Q8IWW6 846 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ELMOD2Q8IZ81 293 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MINDY2Q8NBR6 621 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 VPS33AQ96AX1 596 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CCDC106Q9BWC9 280 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 EMILIN2Q9BXX0 1053 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZFYVE1Q9HBF4 777 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 C12orf4Q9NQ89 552 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ARL15Q9NXU5 204 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZDHHC2Q9UIJ5 367 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 WBP11Q9Y2W2 641 aaKnown RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KIF13BQ9NQT8 1826 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MYO1GB0I1T2 1018 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HHLA1C9JL84 531 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 H3BNH8 94 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CDC7O00311 574 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 STC2O76061 302 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HGFP14210 728 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PRKACBP22694 351 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ATP5F1P24539 256 aaPredicted RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SERPINA4P29622 427 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NDST2P52849 883 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NFYCQ13952 458 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PCLAFQ15004 111 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LSM12Q3MHD2 195 aaKnown RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PARP15Q460N3 678 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ANKS6Q68DC2 871 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CCSAPQ6IQ19 270 aaPredicted RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CHST15Q7LFX5 561 aaPredicted RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CUZD1Q86UP6 607 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FAM126BQ8IXS8 530 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 APCDD1Q8J025 514 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TRUB1Q8WWH5 349 aaKnown RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 WBP2Q969T9 261 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CDKN2AIPNLQ96HQ2 116 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 C8orf48Q96LL4 319 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 DNAJC28Q9NX36 388 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 INSL5Q9Y5Q6 135 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SHROOM3Q8TF72 1996 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SYNCRIPO60506 623 aaKnown RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC25A14O95258 325 aaPredicted RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 BMP10O95393 424 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ITPKAP23677 461 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KCNK10P57789 538 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GNG2P59768 71 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TEAD2Q15562 447 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LHX8Q68G74 356 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 BORAQ6PGQ7 559 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PIWIL4Q7Z3Z4 852 aaKnown RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HJURPQ8NCD3 748 aaPredicted RBP10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MTERF3Q96E29 417 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TRIM54Q9BYV2 358 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LINC00597Q9H2U6 94 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HSFX1Q9UBD0 423 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FETUBQ9UGM5 382 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KLHL20Q9Y2M5 609 aa10.6□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MUSKO15146 869 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SMAD6O43541 496 aaKnown RBP10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CLIC3O95833 236 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FGF1P05230 155 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MYOGP15173 224 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SCNN1AP37088 669 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MGAT3Q09327 533 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZNF648Q5T619 568 aaPredicted RBP10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TTC23Q5W5X9 447 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PM20D1Q6GTS8 502 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SERPINA13PQ6UXR4 307 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GPR180Q86V85 440 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SMG7Q92540 1137 aaKnown RBP10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NSUN5Q96P11 429 aaKnown RBP10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CLSTN3Q9BQT9 956 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms