RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 COG4Q9H9E3 785 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 HOMER3Q9NSC5 361 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 SYBUQ9NX95 663 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 RIMKLBQ9ULI2 386 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 SSUH2Q9Y2M2 353 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 PTPRQQ9UMZ3 2332 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 FAM208BQ5VWN6 2430 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 PGRMC1O00264 195 aaKnown RBP17.71■□□□□ 0.43
COL9A3-214ENST00000490398 FANCGO15287 622 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 EFSO43281 561 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 TMEM63AO94886 807 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 GAS8O95995 478 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 C9P02748 559 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 AMD1P17707 334 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 TPSB2P20231 275 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 TPSAB1Q15661 275 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 PCID2Q5JVF3 399 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 ANKS6Q68DC2 871 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 FAM129CQ86XR2 697 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 MPP5Q8N3R9 675 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 PPHLN1Q8NEY8 458 aaKnown RBP17.71■□□□□ 0.43
COL9A3-214ENST00000490398 OR6P1Q8NGX9 317 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 OR4L1Q8NH43 312 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 ACTRT1Q8TDG2 376 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 HEXDCQ8WVB3 486 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 C9orf72Q96LT7 481 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 CTRCQ99895 268 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 OR52A5Q9H2C5 316 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 APMAPQ9HDC9 416 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 TREX1Q9NSU2 369 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 ACSL5Q9ULC5 683 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 B3GALT1Q9Y5Z6 326 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 ATMQ13315 3056 aa17.71■□□□□ 0.43
COL9A3-214ENST00000490398 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.7■□□□□ 0.42
COL9A3-214ENST00000490398 CAPZBP47756 277 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 SEPHS1P49903 392 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 CXADRP78310 365 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 ITIH4Q14624 930 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 LRRC8BQ6P9F7 803 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 CCDC137Q6PK04 289 aaKnown RBP17.7■□□□□ 0.42
COL9A3-214ENST00000490398 AFTPHQ6ULP2 937 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 C4orf22Q6V702 233 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 FAM92BQ6ZTR7 304 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 RBM12BQ8IXT5 1001 aaKnown RBP17.7■□□□□ 0.42
COL9A3-214ENST00000490398 LKAAEAR1Q8TD35 194 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 CPT1BQ92523 772 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 BBC3Q96PG8 261 aaPredicted RBP17.7■□□□□ 0.42
COL9A3-214ENST00000490398 DPH1Q9BZG8 443 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 EPB41L1Q9H4G0 881 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 WDR70Q9NW82 654 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 SLC39A1Q9NY26 324 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 AKAP7Q9P0M2 348 aaPredicted RBP17.7■□□□□ 0.42
COL9A3-214ENST00000490398 ACSL6Q9UKU0 697 aa17.7■□□□□ 0.42
COL9A3-214ENST00000490398 C17orf113A0A1B0GUU1 675 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 B4E171 279 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 PHF2O75151 1096 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 SLC35G4P0C7Q5 338 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 ITGB6P18564 788 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 ARNTP27540 789 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 TSPAN7P41732 249 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 NSG1P42857 185 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 MAGEA6P43360 314 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 NPY2RP49146 381 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 SH3BP2P78314 561 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 BRD3Q15059 726 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 NLRP9Q7RTR0 991 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 CAND1Q86VP6 1230 aaKnown RBP17.69■□□□□ 0.42
COL9A3-214ENST00000490398 DTX1Q86Y01 620 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 PLXDC1Q8IUK5 500 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 PHC3Q8NDX5 983 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 MFSD3Q96ES6 412 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 FCRL3Q96P31 734 aaPredicted RBP17.69■□□□□ 0.42
COL9A3-214ENST00000490398 TAAR9Q96RI9 348 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 SIDT1Q9NXL6 827 aaKnown RBP17.69■□□□□ 0.42
COL9A3-214ENST00000490398 SLC24A2Q9UI40 661 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 PCDHGA3Q9Y5H0 932 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 AHCTF1Q8WYP5 2266 aa17.69■□□□□ 0.42
COL9A3-214ENST00000490398 BSNQ9UPA5 3926 aa17.68■□□□□ 0.42
COL9A3-214ENST00000490398 IQCF5A8MTL0 148 aa17.68■□□□□ 0.42
COL9A3-214ENST00000490398 GOLGA8KD6RF30 607 aa17.68■□□□□ 0.42
COL9A3-214ENST00000490398 GOLGA8TH3BQL2 631 aa17.68■□□□□ 0.42
COL9A3-214ENST00000490398 AP2A2O94973 939 aa17.68■□□□□ 0.42
COL9A3-214ENST00000490398 WT1P19544 449 aaPredicted RBP17.68■□□□□ 0.42
COL9A3-214ENST00000490398 ARCN1P48444 511 aaKnown RBP17.68■□□□□ 0.42
COL9A3-214ENST00000490398 MC2RQ01718 297 aa17.68■□□□□ 0.42
COL9A3-214ENST00000490398 GSE1Q14687 1217 aa17.68■□□□□ 0.42
COL9A3-214ENST00000490398 IRGCQ6NXR0 463 aa17.68■□□□□ 0.42
COL9A3-214ENST00000490398 PACS1Q6VY07 963 aa17.68■□□□□ 0.42
COL9A3-214ENST00000490398 CERS6Q6ZMG9 384 aa17.68■□□□□ 0.42
COL9A3-214ENST00000490398 VASH2Q86V25 355 aa17.68■□□□□ 0.42
COL9A3-214ENST00000490398 AGGF1Q8N302 714 aaeCLIP17.68■□□□□ 0.42
COL9A3-214ENST00000490398 PPM1MQ96MI6 270 aa17.68■□□□□ 0.42
COL9A3-214ENST00000490398 KIFC1Q9BW19 673 aa17.68■□□□□ 0.42
COL9A3-214ENST00000490398 IL22Q9GZX6 179 aa17.68■□□□□ 0.42
COL9A3-214ENST00000490398 GOLGA8MH3BSY2 632 aa17.67■□□□□ 0.42
COL9A3-214ENST00000490398 F7P08709 466 aaPredicted RBP17.67■□□□□ 0.42
COL9A3-214ENST00000490398 ANKRD34CP0C6C1 535 aa17.67■□□□□ 0.42
COL9A3-214ENST00000490398 GNG11P61952 73 aa17.67■□□□□ 0.42
COL9A3-214ENST00000490398 PRAMEP78395 509 aa17.67■□□□□ 0.42
COL9A3-214ENST00000490398 LAMB3Q13751 1172 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms