RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ADAMTSL2Q86TH1 951 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 KIRREL3Q8IZU9 778 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 FBXO39Q8N4B4 442 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 MAPK15Q8TD08 544 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 BTN2A2Q8WVV5 523 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 RILPQ96NA2 401 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 C1QTNF3Q9BXJ4 246 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 NMUR2Q9GZQ4 415 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 BTBD1Q9H0C5 482 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 COG4Q9H9E3 785 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 EML4Q9HC35 981 aaKnown RBP13.96□□□□□ -0.18
CUX1-209ENST00000487284 TXLNGQ9NUQ3 528 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 SPATA6Q9NWH7 488 aaPredicted RBP13.96□□□□□ -0.18
CUX1-209ENST00000487284 KCTD5Q9NXV2 234 aa13.96□□□□□ -0.18
CUX1-209ENST00000487284 ZFR2Q9UPR6 939 aaKnown RBP13.96□□□□□ -0.18
CUX1-209ENST00000487284 APOBEC2Q9Y235 224 aaKnown RBP13.96□□□□□ -0.18
CUX1-209ENST00000487284 TBC1D3DA0A087WVF3 549 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 TBC1D3IA0A087WXS9 549 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 TBC1D3EA0A087X179 549 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 TBC1D3KA0A087X1G2 549 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 A0A1W2PQU0 124 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 TBC1D3FA6NER0 549 aaPredicted RBP13.95□□□□□ -0.18
CUX1-209ENST00000487284 IGLON5A6NGN9 336 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 TBC1D3LB9A6J9 549 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 RNGTTO60942 597 aaKnown RBP13.95□□□□□ -0.18
CUX1-209ENST00000487284 ATP5HO75947 161 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 TM7SF2O76062 418 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 UNC5CO95185 931 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 SERPINA6P08185 405 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 TBC1D3HP0C7X1 549 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 CBSLP0DN79 551 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 ATP1B2P14415 290 aaPredicted RBP13.95□□□□□ -0.18
CUX1-209ENST00000487284 AKT1P31749 480 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 CBSP35520 551 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 NAA20P61599 178 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 PPP2CBP62714 309 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 PPP2CAP67775 309 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 GBX1Q14549 363 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 KHDC1Q4VXA5 237 aaKnown RBP13.95□□□□□ -0.18
CUX1-209ENST00000487284 ACSBG2Q5FVE4 666 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 VWA5B1Q5TIE3 1220 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 TBC1D3GQ6DHY5 549 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 TBC1D3CQ6IPX1 549 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 SBSNQ6UWP8 590 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 MAMSTRQ6ZN01 415 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 GPSM1Q86YR5 675 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 TBC1D3Q8IZP1 549 aaPredicted RBP13.95□□□□□ -0.18
CUX1-209ENST00000487284 MYO1HQ8N1T3 1032 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 FAM160A2Q8N612 972 aaPredicted RBP13.95□□□□□ -0.18
CUX1-209ENST00000487284 FRMD1Q8N878 549 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 TMEM105Q8N8V8 129 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 AGR3Q8TD06 166 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 RLN3Q8WXF3 142 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 GLYATL1Q969I3 302 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 AP2M1Q96CW1 435 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 DCUN1D1Q96GG9 259 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 PRR11Q96HE9 360 aaPredicted RBP13.95□□□□□ -0.18
CUX1-209ENST00000487284 PREBQ9HCU5 417 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 NUDT4Q9NZJ9 180 aa13.95□□□□□ -0.18
CUX1-209ENST00000487284 PLXND1Q9Y4D7 1925 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 CFAP99D6REC4 459 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 SGTAO43765 313 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 DIAPH2O60879 1101 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 SUPT7LO94864 414 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 AP2A2O94973 939 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 SIX3O95343 332 aaPredicted RBP13.94□□□□□ -0.18
CUX1-209ENST00000487284 SEMA4FO95754 770 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 RPS17P08708 135 aaKnown RBP13.94□□□□□ -0.18
CUX1-209ENST00000487284 T-ENOLP0DO92 83 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 HK3P52790 923 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 ALDH18A1P54886 795 aaKnown RBP13.94□□□□□ -0.18
CUX1-209ENST00000487284 KRT72Q14CN4 511 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 PPP1R3AQ16821 1122 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 TMEM259Q4ZIN3 620 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 SH2D4BQ5SQS7 431 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 LDLRAP1Q5SW96 308 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 KIAA1161Q6NSJ0 714 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 TSSK4Q6SA08 328 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 OR2T34Q8NGX1 318 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 KLK6Q92876 244 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 NUS1Q96E22 293 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 TOE1Q96GM8 510 aaKnown RBP13.94□□□□□ -0.18
CUX1-209ENST00000487284 FAR2Q96K12 515 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 SHCBP1LQ9BZQ2 653 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 SGK2Q9HBY8 427 aa13.94□□□□□ -0.18
CUX1-209ENST00000487284 MBD1Q9UIS9 605 aaPredicted RBP13.94□□□□□ -0.18
CUX1-209ENST00000487284 IGHV1OR15-9A0A0B4J2B8 117 aa13.93□□□□□ -0.18
CUX1-209ENST00000487284 LRRC72A6NJI9 287 aa13.93□□□□□ -0.18
CUX1-209ENST00000487284 MYO1CO00159 1063 aa13.93□□□□□ -0.18
CUX1-209ENST00000487284 QSOX1O00391 747 aa13.93□□□□□ -0.18
CUX1-209ENST00000487284 UBFD1O14562 309 aaKnown RBP13.93□□□□□ -0.18
CUX1-209ENST00000487284 ZNF217O75362 1048 aa13.93□□□□□ -0.18
CUX1-209ENST00000487284 ENO3P13929 434 aaPredicted RBP13.93□□□□□ -0.18
CUX1-209ENST00000487284 AOAHP28039 575 aa13.93□□□□□ -0.18
CUX1-209ENST00000487284 MAT2AP31153 395 aaKnown RBP13.93□□□□□ -0.18
CUX1-209ENST00000487284 CCR7P32248 378 aa13.93□□□□□ -0.18
CUX1-209ENST00000487284 RPS21P63220 83 aaKnown RBP13.93□□□□□ -0.18
CUX1-209ENST00000487284 DPTQ07507 201 aa13.93□□□□□ -0.18
CUX1-209ENST00000487284 DMWDQ09019 674 aa13.93□□□□□ -0.18
CUX1-209ENST00000487284 FGL2Q14314 439 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms