RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 C20orf96Q9NUD7 363 aaPredicted RBP7.9□□□□□ -1.14
USP40-216ENST00000485943 SPATS2LQ9NUQ6 558 aaKnown RBP7.9□□□□□ -1.14
USP40-216ENST00000485943 POT1Q9NUX5 634 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 SYBUQ9NX95 663 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 ACSL5Q9ULC5 683 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 MRFAP1Q9Y605 127 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 RPS6KL1Q9Y6S9 549 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 UNC13CQ8NB66 2214 aa7.9□□□□□ -1.15
USP40-216ENST00000485943 SCN8AQ9UQD0 1980 aa7.9□□□□□ -1.15
USP40-216ENST00000485943 DMXL1Q9Y485 3027 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 CCDC162PA2VCL2 907 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 CTAGE15A4D2H0 777 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 C10orf142B7Z368 130 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 H3BMM5 538 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 H7C0S8 307 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 DNALI1O14645 258 aaPredicted RBP7.89□□□□□ -1.15
USP40-216ENST00000485943 CD3EAPO15446 510 aaKnown RBP7.89□□□□□ -1.15
USP40-216ENST00000485943 TTI1O43156 1089 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 RRP8O43159 456 aaKnown RBP7.89□□□□□ -1.15
USP40-216ENST00000485943 GPR39O43194 453 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 NDUFB5O43674 189 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 LDB2O43679 373 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 VAPBO95292 243 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 CPNE6O95741 557 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 TTC4O95801 387 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 SOD1P00441 154 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 CTAGE8P0CG41 777 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 MLNP12872 115 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 PNLIPP16233 465 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 ITGB6P18564 788 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 CHRM3P20309 590 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 GRIA1P42261 906 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 GPR3P46089 330 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 CSE1LP55060 971 aaKnown RBP7.89□□□□□ -1.15
USP40-216ENST00000485943 EIF3BP55884 814 aaKnown RBP7.89□□□□□ -1.15
USP40-216ENST00000485943 CCL7P80098 99 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 GPLD1P80108 840 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 POU4F2Q12837 409 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 PTK6Q13882 451 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 HLTFQ14527 1009 aaKnown RBP eCLIP7.89□□□□□ -1.15
USP40-216ENST00000485943 MORF4L2Q15014 288 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 SMAD1Q15797 465 aaKnown RBP7.89□□□□□ -1.15
USP40-216ENST00000485943 HIF1AQ16665 826 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 TTC27Q6P3X3 843 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 UNQ6494/PRO21346Q6UXR6 183 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 USP53Q70EK8 1073 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 CENPUQ71F23 418 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 OTOAQ7RTW8 1153 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 TMPRSS7Q7RTY8 843 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 PRICKLE2Q7Z3G6 844 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 RAB44Q7Z6P3 723 aaPredicted RBP7.89□□□□□ -1.15
USP40-216ENST00000485943 CTAGE6Q86UF2 777 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 OOSP2Q86WS3 158 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 FAM129CQ86XR2 697 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 PLXDC1Q8IUK5 500 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 CTAGE4Q8IX94 777 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 PALM2Q8IXS6 379 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 MPP5Q8N3R9 675 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 RASGEF1AQ8N9B8 481 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 GLIS1Q8NBF1 620 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 GPR156Q8NFN8 814 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 SLC37A2Q8TED4 501 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 CDKL2Q92772 493 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 VOPP1Q96AW1 172 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 EID2BQ96D98 161 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 CFAP36Q96G28 342 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 GORASP1Q9BQQ3 440 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 FAM167BQ9BTA0 163 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 NAT9Q9BTE0 207 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 SLC7A5P2Q9GIP4 190 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 DPH5Q9H2P9 285 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 EPB41L1Q9H4G0 881 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 PRDM8Q9NQV8 689 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 CHRAC1Q9NRG0 131 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 IRAK4Q9NWZ3 460 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 CPNE7Q9UBL6 633 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 TBC1D29Q9UFV1 150 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 KLHL3Q9UH77 587 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 PCYOX1Q9UHG3 505 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 KLK13Q9UKR3 277 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 SOX13Q9UN79 622 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 TDRKHQ9Y2W6 561 aaKnown RBP7.89□□□□□ -1.15
USP40-216ENST00000485943 MSRB2Q9Y3D2 182 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 PLEKHM1Q9Y4G2 1056 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 RNF215Q9Y6U7 377 aa7.89□□□□□ -1.15
USP40-216ENST00000485943 MYLKQ15746 1914 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 TMEM8BA6NDV4 472 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 OR51F1A6NGY5 319 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 A8MU76 341 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 PRMT5O14744 637 aaPredicted RBP7.88□□□□□ -1.15
USP40-216ENST00000485943 LIN7AO14910 233 aaPredicted RBP7.88□□□□□ -1.15
USP40-216ENST00000485943 CHUKO15111 745 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 PGAM1P18669 254 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 PRLHRP49683 370 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 MAPK10P53779 464 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 SLC12A2P55011 1212 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 OR1D5P58170 312 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 GABREP78334 506 aa7.88□□□□□ -1.15
USP40-216ENST00000485943 INSM1Q01101 510 aaPredicted RBP7.88□□□□□ -1.15
USP40-216ENST00000485943 EIF3IQ13347 325 aaKnown RBP7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms