RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 CSRP3P50461 194 aa21.05■□□□□ 0.96
USP40-215ENST00000484528 ZNF140P52738 457 aaPredicted RBP21.05■□□□□ 0.96
USP40-215ENST00000484528 DENND5AQ6IQ26 1287 aa21.05■□□□□ 0.96
USP40-215ENST00000484528 OR2L2Q8NH16 312 aa21.05■□□□□ 0.96
USP40-215ENST00000484528 C9orf43Q8TAL5 461 aaPredicted RBP21.05■□□□□ 0.96
USP40-215ENST00000484528 DCUN1D1Q96GG9 259 aa21.05■□□□□ 0.96
USP40-215ENST00000484528 SLC41A2Q96JW4 573 aa21.05■□□□□ 0.96
USP40-215ENST00000484528 RMDN2Q96LZ7 410 aa21.05■□□□□ 0.96
USP40-215ENST00000484528 HRASLS2Q9NWW9 162 aa21.05■□□□□ 0.96
USP40-215ENST00000484528 TUBD1Q9UJT1 453 aa21.05■□□□□ 0.96
USP40-215ENST00000484528 RARRES3Q9UL19 164 aa21.05■□□□□ 0.96
USP40-215ENST00000484528 UBA6A0AVT1 1052 aaPredicted RBP21.04■□□□□ 0.96
USP40-215ENST00000484528 CRTAMO95727 393 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 FURINP09958 794 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 CETN2P41208 172 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 ARL4DP49703 201 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 TLE1Q04724 770 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 MSLNQ13421 630 aaPredicted RBP21.04■□□□□ 0.96
USP40-215ENST00000484528 ERV3-1Q14264 604 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 LARP7Q4G0J3 582 aaKnown RBP eCLIP21.04■□□□□ 0.96
USP40-215ENST00000484528 BCL7AQ4VC05 210 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 PWWP2BQ6NUJ5 590 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 FBXO38Q6PIJ6 1188 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 NXPE1Q8N323 547 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 LRRC57Q8N9N7 239 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 APOBEC4Q8WW27 367 aaKnown RBP21.04■□□□□ 0.96
USP40-215ENST00000484528 MRFAP1L1Q96HT8 127 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 RBSNQ9H1K0 784 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 PDE7BQ9NP56 450 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 SEMA5BQ9P283 1151 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 SLC24A2Q9UI40 661 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 ACSL5Q9ULC5 683 aa21.04■□□□□ 0.96
USP40-215ENST00000484528 PACSIN2Q9UNF0 486 aaPredicted RBP21.04■□□□□ 0.96
USP40-215ENST00000484528 OR6C74A6NCV1 312 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 TLCD2A6NGC4 264 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 TJP3O95049 919 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 PTMAP06454 111 aaKnown RBP21.03■□□□□ 0.96
USP40-215ENST00000484528 ITGALP20701 1170 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 VAV2P52735 878 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 DNASE1L3Q13609 305 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 GSE1Q14687 1217 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 COLEC12Q5KU26 742 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 KIAA1328Q86T90 577 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 TMEM135Q86UB9 458 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 OOSP2Q86WS3 158 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 CFAP206Q8IYR0 622 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 CT55Q8WUE5 264 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 ABHD17AQ96GS6 310 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 DNAJC1Q96KC8 554 aaKnown RBP21.03■□□□□ 0.96
USP40-215ENST00000484528 PPM1MQ96MI6 270 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 RUFY1Q96T51 708 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 FGF21Q9NSA1 209 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 PCDHB3Q9Y5E6 796 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 DOPEY2Q9Y3R5 2298 aa21.03■□□□□ 0.96
USP40-215ENST00000484528 CDC14CA4D256 554 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 GOLGA6L3A6NEY3 463 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 BTNL10A8MVZ5 291 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 DDX3YO15523 660 aaKnown RBP21.02■□□□□ 0.96
USP40-215ENST00000484528 NTRK1P04629 796 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 CCNYL3P0C7X3 344 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 PRSS56P0CW18 603 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 RALBP11234 206 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 MC4RP32245 332 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 PRLHRP49683 370 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 CDKN1CP49918 316 aaPredicted RBP21.02■□□□□ 0.96
USP40-215ENST00000484528 GPR19Q15760 415 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 ARMC6Q6NXE6 501 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 ARHGEF18Q6ZSZ5 1173 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 TAB3Q8N5C8 712 aaPredicted RBP21.02■□□□□ 0.96
USP40-215ENST00000484528 HM13Q8TCT9 377 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 ULK4Q96C45 1275 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 CALR3Q96L12 384 aaKnown RBP21.02■□□□□ 0.96
USP40-215ENST00000484528 COPS8Q99627 209 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 EPN3Q9H201 632 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 KIR3DX1Q9H7L2 352 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 AKIRIN1Q9H9L7 192 aaPredicted RBP21.02■□□□□ 0.96
USP40-215ENST00000484528 LHX9Q9NQ69 397 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 PIH1D1Q9NWS0 290 aaKnown RBP21.02■□□□□ 0.96
USP40-215ENST00000484528 PADI1Q9ULC6 663 aa21.02■□□□□ 0.96
USP40-215ENST00000484528 A0A0U1RQJ8 604 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 AGAP14A8MT82 685 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 LDB2O43679 373 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 TPH1P17752 444 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 POLR2CP19387 275 aaPredicted RBP21.01■□□□□ 0.95
USP40-215ENST00000484528 NR1D1P20393 614 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 PDE1BQ01064 536 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 ACY1Q03154 408 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 SEPT6Q14141 434 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 KRT33BQ14525 404 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 CRTC2Q53ET0 693 aaPredicted RBP21.01■□□□□ 0.95
USP40-215ENST00000484528 CYB5D1Q6P9G0 228 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 FAM199XQ6PEV8 388 aaPredicted RBP21.01■□□□□ 0.95
USP40-215ENST00000484528 SNX20Q7Z614 316 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 FAM71DQ8N9W8 422 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 LINC00615Q96LM1 132 aaPredicted RBP21.01■□□□□ 0.95
USP40-215ENST00000484528 CD180Q99467 661 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 NRTNQ99748 197 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 SOHLH2Q9NX45 425 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 KCND3Q9UK17 655 aa21.01■□□□□ 0.95
USP40-215ENST00000484528 KCNMB2Q9Y691 235 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms