RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	NOA1	Q8NC60	698 aa	Known RBP	10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	BBOF1	Q8ND07	529 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	GPR150	Q8NGU9	434 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	JPH3	Q8WXH2	748 aa	Predicted RBP	10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	ELMO1	Q92556	727 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	CXorf40B	Q96DE9	158 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	RMDN2	Q96LZ7	410 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	C12orf66	Q96MD2	445 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	GFM1	Q96RP9	751 aa	Known RBP	10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	SLC38A3	Q99624	504 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	PRR14	Q9BWN1	585 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	ZMYND15	Q9H091	742 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	RAB17	Q9H0T7	212 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	LRRN3	Q9H3W5	708 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	STN1	Q9H668	368 aa	Known RBP	10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	COG4	Q9H9E3	785 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	VPS37B	Q9H9H4	285 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	RDH14	Q9HBH5	336 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	PLAC1	Q9HBJ0	212 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	SARS2	Q9NP81	518 aa	Known RBP	10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	WASH6P	Q9NQA3	447 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	KCNK4	Q9NYG8	393 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	WHRN	Q9P202	907 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	SLC17A6	Q9P2U8	582 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	PCDHB1	Q9Y5F3	818 aa		10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	TDRD6	O60522	2096 aa	Known RBP	10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	ARID1B	Q8NFD5	2236 aa	Predicted RBP	10.06	□□□□□ -0.8
HDAC6-222	ENST00000478095	PCNX2	A6NKB5	2137 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	OR5K4	A6NMS3	321 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095		D6RAR5	112 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	NTN3	O00634	580 aa	Predicted RBP	10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	PRMT5	O14744	637 aa	Predicted RBP	10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	CS	O75390	466 aa	Known RBP	10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	ERVK-10	P10266	1014 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	PNLIP	P16233	465 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	PDHA2	P29803	388 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	FMO4	P31512	558 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	CCR7	P32248	378 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	PPARG	P37231	505 aa	Predicted RBP	10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	SLC1A2	P43004	574 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	PDX1	P52945	283 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	PLTP	P55058	493 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	SHC2	P98077	582 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	FOXK2	Q01167	660 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	CTBP1	Q13363	440 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	NR1D2	Q14995	579 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	RPE65	Q16518	533 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	MAP9	Q49MG5	647 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	ZNF658B	Q4V348	819 aa	Predicted RBP	10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	HSP90AA5P	Q58FG0	334 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	ZNF789	Q5FWF6	425 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	CTSL3P	Q5NE16	218 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	ARMC3	Q5W041	872 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	PTRHD1	Q6GMV3	140 aa	Known RBP	10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	UNC5A	Q6ZN44	842 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	RBM44	Q6ZP01	1051 aa	Known RBP	10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	CAPN12	Q6ZSI9	719 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	USP53	Q70EK8	1073 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	CENPU	Q71F23	418 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	TMPRSS9	Q7Z410	1059 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	B3GNT8	Q7Z7M8	397 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	KCNMB4	Q86W47	210 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	CILP2	Q8IUL8	1156 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	DCBLD1	Q8N8Z6	715 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	FBXO36	Q8NEA4	188 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	MNS1	Q8NEH6	495 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	LPGAT1	Q92604	370 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	FAM136A	Q96C01	138 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	DEPDC7	Q96QD5	511 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	INSM2	Q96T92	566 aa	Predicted RBP	10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	NUDT22	Q9BRQ3	303 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	TBC1D10A	Q9BXI6	508 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	FOXP3	Q9BZS1	431 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	P2RY12	Q9H244	342 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	FBXO6	Q9NRD1	293 aa	Predicted RBP	10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	IARS2	Q9NSE4	1012 aa	Known RBP	10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	POT1	Q9NUX5	634 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	ZC3H7B	Q9UGR2	993 aa	Known RBP	10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	GNPTG	Q9UJJ9	305 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	CRYL1	Q9Y2S2	319 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	MSRB2	Q9Y3D2	182 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	NEUROG3	Q9Y4Z2	214 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	FAM169A	Q9Y6X4	670 aa		10.05	□□□□□ -0.8
HDAC6-222	ENST00000478095	IGHV1OR21-1	A0A087WYE8	117 aa		10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	C17orf113	A0A1B0GUU1	675 aa		10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	KLHL33	A6NCF5	533 aa		10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	QSOX1	O00391	747 aa		10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	NDC80	O14777	642 aa		10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	NIPSNAP2	O75323	286 aa		10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	TCEA3	O75764	348 aa		10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	MTHFD1	P11586	935 aa	Known RBP	10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	XRCC1	P18887	633 aa	Predicted RBP	10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	OGN	P20774	298 aa	Known RBP	10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	MPST	P25325	297 aa		10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	CD1C	P29017	333 aa		10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	CSF2RB	P32927	897 aa		10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	GPR3	P46089	330 aa		10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	MPP1	Q00013	466 aa		10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	GUCY2D	Q02846	1103 aa		10.04	□□□□□ -0.8
HDAC6-222	ENST00000478095	HSPA14	Q0VDF9	509 aa		10.04	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms