RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 TMEM11P17152 192 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 TYMPP19971 482 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 ZNF10P21506 573 aaPredicted RBP1.28□□□□□ -2.2
UBXN4-207ENST00000471246 PSMA4P25789 261 aaKnown RBP1.28□□□□□ -2.2
UBXN4-207ENST00000471246 HOXC13P31276 330 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 PPARGP37231 505 aaPredicted RBP1.28□□□□□ -2.2
UBXN4-207ENST00000471246 PSMC4P43686 418 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 CAMPP49913 170 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 CDH11P55287 796 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 RPS18P62269 152 aaKnown RBP1.28□□□□□ -2.2
UBXN4-207ENST00000471246 SNRPD1P62314 119 aaKnown RBP1.28□□□□□ -2.2
UBXN4-207ENST00000471246 KCNJ10P78508 379 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 GAGE2BQ13066 116 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 G3BP1Q13283 466 aaKnown RBP eCLIP1.28□□□□□ -2.24e-11■□□□□ 11
UBXN4-207ENST00000471246 GPR17Q13304 367 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 P2RY6Q15077 328 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 ZSCAN23Q3MJ62 389 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 GAGE2EQ4V326 116 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 ALFQ53S48 1182 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 RARS2Q5T160 578 aaKnown RBP1.28□□□□□ -2.2
UBXN4-207ENST00000471246 ADALQ6DHV7 355 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 JADE1Q6IE81 842 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 GAGE2AQ6NT46 116 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 KLC3Q6P597 504 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 TMEM154Q6P9G4 183 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 SARM1Q6SZW1 724 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 MMS22LQ6ZRQ5 1243 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 CLEC17AQ6ZS10 378 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 Q6ZSR9 355 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 TMTC3Q6ZXV5 915 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 GALNT5Q7Z7M9 940 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 ARID3BQ8IVW6 561 aaPredicted RBP1.28□□□□□ -2.2
UBXN4-207ENST00000471246 GPALPP1Q8IXQ4 340 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 SMC5Q8IY18 1101 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 ZNF440Q8IYI8 595 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 SCML4Q8N228 414 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 PDILTQ8N807 584 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 ZNF383Q8NA42 475 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 OR2T6Q8NHC8 308 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 POMGNT1Q8WZA1 660 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 DAZLQ92904 295 aaKnown RBP1.28□□□□□ -2.2
UBXN4-207ENST00000471246 TMEM143Q96AN5 459 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 MOAP1Q96BY2 351 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 GIMAP5Q96F15 307 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 GMPPAQ96IJ6 420 aaPredicted RBP1.28□□□□□ -2.2
UBXN4-207ENST00000471246 PRAC1Q96KF2 57 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 POM121L2Q96KW2 1035 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 PPM1MQ96MI6 270 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 SLC22A12Q96S37 553 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 EGFL8Q99944 293 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 RTP3Q9BQQ7 232 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 PYGO2Q9BRQ0 406 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 MCRIP2Q9BUT9 160 aaKnown RBP1.28□□□□□ -2.2
UBXN4-207ENST00000471246 SLC26A6Q9BXS9 759 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 TRIM15Q9C019 465 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 SH2D4AQ9H788 454 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 DNAJC18Q9H819 358 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 ZDHHC18Q9NUE0 388 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 PLCXD1Q9NUJ7 323 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 ORC3Q9UBD5 711 aaPredicted RBP1.28□□□□□ -2.2
UBXN4-207ENST00000471246 GAGE2DQ9UEU5 116 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 CORO1CQ9ULV4 474 aaPredicted RBP1.28□□□□□ -2.2
UBXN4-207ENST00000471246 SLC7A7Q9UM01 511 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 CMAHPQ9Y471 501 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 SPIN1Q9Y657 262 aaPredicted RBP1.28□□□□□ -2.2
UBXN4-207ENST00000471246 SMAD5-AS1Q9Y6J3 95 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 PRSS21Q9Y6M0 314 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 SESN1Q9Y6P5 492 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 CROCCQ5TZA2 2017 aa1.28□□□□□ -2.2
UBXN4-207ENST00000471246 A0A087WW49 117 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 PRSS51A0A1B0GVH4 220 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 A0A1W2PR77 199 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 A0A1W2PRB8 838 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 PLEKHD1A6NEE1 506 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 B4E171 279 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 H7C423 109 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 NDUFS4O43181 175 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 DCXO43602 365 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 RNASEH2AO75792 299 aaKnown RBP1.27□□□□□ -2.21
UBXN4-207ENST00000471246 CDC123O75794 336 aaPredicted RBP1.27□□□□□ -2.21
UBXN4-207ENST00000471246 ZFAND5O76080 213 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 TPPPO94811 219 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 DDX58O95786 925 aaKnown RBP1.27□□□□□ -2.21
UBXN4-207ENST00000471246 SCGB1D1O95968 90 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 RAF1P04049 648 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 FRMD6-AS1P0C7T7 363 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 LAMP2P13473 410 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 GABRB1P18505 474 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 SP100P23497 879 aaPredicted RBP1.27□□□□□ -2.21
UBXN4-207ENST00000471246 CHMP24386 653 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 PON1P27169 355 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 NMBRP28336 390 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 CEACAM8P31997 349 aaPredicted RBP1.27□□□□□ -2.21
UBXN4-207ENST00000471246 TSPAN7P41732 249 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 SLC6A12P48065 614 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 BMXP51813 675 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 DSCR10P59022 87 aa1.27□□□□□ -2.21
UBXN4-207ENST00000471246 SNRPEP62304 92 aaKnown RBP1.27□□□□□ -2.21
UBXN4-207ENST00000471246 MRPS5P82675 430 aaKnown RBP1.27□□□□□ -2.21
UBXN4-207ENST00000471246 PPP2R2BQ00005 443 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms