RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 TSC22D2O75157 780 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 EFEMP2O95967 443 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 TYRP14679 529 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 ZNF30P17039 623 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 GJA1P17302 382 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 PBLDP30039 288 aaPredicted RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 ARRB1P49407 418 aaPredicted RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 SLC10A7Q0GE19 358 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 VITQ6UXI7 678 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 RSPO2Q6UXX9 243 aaPredicted RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 ZC3HC1Q86WB0 502 aaKnown RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 SLC22A9Q8IVM8 553 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 UBALD2Q8IYN6 164 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 RBFAQ8N0V3 343 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 PQLC1Q8N2U9 271 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 NKAPQ8N5F7 415 aaKnown RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 AADATQ8N5Z0 425 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 HPS1Q92902 700 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 NSMCE2Q96MF7 247 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 PSKH2Q96QS6 385 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 COPS8Q99627 209 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 PLAC1Q9HBJ0 212 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 TRNAU1APQ9NX07 287 aaKnown RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 SPATA2Q9UM82 520 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 WBP11Q9Y2W2 641 aaKnown RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 PCDHB1Q9Y5F3 818 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 MYO1GB0I1T2 1018 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 J3KR12 359 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 GSC2O15499 205 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 RPP40O75818 363 aaKnown RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 PIAS1O75925 651 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 STC2O76061 302 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 BMP10O95393 424 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 ALDOAP04075 364 aaKnown RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 SERPIND1P05546 499 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 SERPINA6P08185 405 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 ANXA11P50995 505 aaKnown RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 DSC2Q02487 901 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 RFX4Q33E94 735 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 CNPY1Q3B7I2 92 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 ZFP69Q49AA0 526 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 FAM91A1Q658Y4 838 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 DENND5AQ6IQ26 1287 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 EID3Q8N140 333 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 CPXM2Q8N436 756 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 PIK3C3Q8NEB9 887 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 PIWIL2Q8TC59 973 aaKnown RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 BCL7CQ8WUZ0 217 aaPredicted RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 TCF12Q99081 682 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 MRPL57Q9BQC6 102 aaKnown RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 PRRG3Q9BZD7 231 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 NUAK2Q9H093 628 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 TRIM39Q9HCM9 518 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 HPS4Q9NQG7 708 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 TREX1Q9NSU2 369 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 CATSPERZQ9NTU4 200 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 INSIG1O15503 277 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 ZSCAN9O15535 394 aaPredicted RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 FKBP9O95302 570 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 C2P06681 752 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 NUP62P37198 522 aaPredicted RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 KCNQ1P51787 676 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 SLC7A9P82251 487 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 ALG1LQ6GMV1 187 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 ZYG11AQ6WRX3 759 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 FKBP9P1Q75LS8 142 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 TRAPPC5Q8IUR0 188 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 PHYKPLQ8IUZ5 450 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 ERI1Q8IV48 349 aaKnown RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 ULK2Q8IYT8 1036 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 VPS37AQ8NEZ2 397 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 PYDC1Q8WXC3 89 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 CCDC3Q9BQI4 270 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 MGME1Q9BQP7 344 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 GPATCH1Q9BRR8 931 aaKnown RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 PHF7Q9BWX1 381 aaPredicted RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 C6orf62Q9GZU0 229 aaPredicted RBP7.56□□□□□ -1.2
USP54-210ENST00000466048 POPDC3Q9HBV1 291 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 DNAJC28Q9NX36 388 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 MAPRE3Q9UPY8 281 aa7.56□□□□□ -1.2
USP54-210ENST00000466048 LOC285095A0A1B0GVY8 99 aa7.55□□□□□ -1.2
USP54-210ENST00000466048 ZBTB14O43829 449 aa7.55□□□□□ -1.2
USP54-210ENST00000466048 PEX1O43933 1283 aa7.55□□□□□ -1.2
USP54-210ENST00000466048 TPBGLP0DKB5 382 aa7.55□□□□□ -1.2
USP54-210ENST00000466048 HMGA1P17096 107 aaKnown RBP7.55□□□□□ -1.2
USP54-210ENST00000466048 MAPK1P28482 360 aa7.55□□□□□ -1.2
USP54-210ENST00000466048 DUSP3P51452 185 aaPredicted RBP7.55□□□□□ -1.2
USP54-210ENST00000466048 DLG2Q15700 870 aa7.55□□□□□ -1.2
USP54-210ENST00000466048 INO80DQ53TQ3 878 aaPredicted RBP7.55□□□□□ -1.2
USP54-210ENST00000466048 LY6G5CQ5SRR4 150 aa7.55□□□□□ -1.2
USP54-210ENST00000466048 DOK6Q6PKX4 331 aa7.55□□□□□ -1.2
USP54-210ENST00000466048 KLHL17Q6TDP4 642 aa7.55□□□□□ -1.2
USP54-210ENST00000466048 NCCRP1Q6ZVX7 275 aaPredicted RBP7.55□□□□□ -1.2
USP54-210ENST00000466048 UBE2Q1Q7Z7E8 422 aa7.55□□□□□ -1.2
USP54-210ENST00000466048 GPR149Q86SP6 731 aa7.55□□□□□ -1.2
USP54-210ENST00000466048 RNF135Q8IUD6 432 aa7.55□□□□□ -1.2
USP54-210ENST00000466048 CCDC36Q8IYA8 594 aa7.55□□□□□ -1.2
USP54-210ENST00000466048 DNASE1L2Q92874 299 aa7.55□□□□□ -1.2
USP54-210ENST00000466048 PTCD3Q96EY7 689 aaKnown RBP7.55□□□□□ -1.2
USP54-210ENST00000466048 SPRTNQ9H040 489 aaPredicted RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms