RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 CACHD1Q5VU97 1274 aa20.74■□□□□ 0.91
HMGB3-205ENST00000455596 DRICH1Q6PGQ1 229 aaPredicted RBP20.74■□□□□ 0.91
HMGB3-205ENST00000455596 XKR5Q6UX68 686 aa20.74■□□□□ 0.91
HMGB3-205ENST00000455596 FAM92BQ6ZTR7 304 aa20.74■□□□□ 0.91
HMGB3-205ENST00000455596 PRUNE1Q86TP1 453 aa20.74■□□□□ 0.91
HMGB3-205ENST00000455596 CACNA2D3Q8IZS8 1091 aa20.74■□□□□ 0.91
HMGB3-205ENST00000455596 SPDYE1Q8NFV5 336 aaPredicted RBP20.74■□□□□ 0.91
HMGB3-205ENST00000455596 ZFPM2Q8WW38 1151 aa20.74■□□□□ 0.91
HMGB3-205ENST00000455596 ZKSCAN5Q9Y2L8 839 aa20.74■□□□□ 0.91
HMGB3-205ENST00000455596 PCDHGA4Q9Y5G9 962 aa20.74■□□□□ 0.91
HMGB3-205ENST00000455596 RAD1O60671 282 aa20.73■□□□□ 0.91
HMGB3-205ENST00000455596 PRB1P04280 392 aa20.73■□□□□ 0.91
HMGB3-205ENST00000455596 MSNP26038 577 aaKnown RBP20.73■□□□□ 0.91
HMGB3-205ENST00000455596 FOXM1Q08050 763 aa20.73■□□□□ 0.91
HMGB3-205ENST00000455596 COL9A2Q14055 689 aaPredicted RBP20.73■□□□□ 0.91
HMGB3-205ENST00000455596 CAPRIN2Q6IMN6 1127 aaKnown RBP20.73■□□□□ 0.91
HMGB3-205ENST00000455596 DUS1LQ6P1R4 473 aaKnown RBP20.73■□□□□ 0.91
HMGB3-205ENST00000455596 MICALCLQ6ZW33 695 aa20.73■□□□□ 0.91
HMGB3-205ENST00000455596 LILRA3Q8N6C8 439 aaPredicted RBP20.73■□□□□ 0.91
HMGB3-205ENST00000455596 GLIS1Q8NBF1 620 aa20.73■□□□□ 0.91
HMGB3-205ENST00000455596 RANBP9Q96S59 729 aa20.73■□□□□ 0.91
HMGB3-205ENST00000455596 TLR10Q9BXR5 811 aa20.73■□□□□ 0.91
HMGB3-205ENST00000455596 COG4Q9H9E3 785 aa20.73■□□□□ 0.91
HMGB3-205ENST00000455596 PILRAQ9UKJ1 303 aa20.73■□□□□ 0.91
HMGB3-205ENST00000455596 DRG1Q9Y295 367 aaKnown RBP20.73■□□□□ 0.91
HMGB3-205ENST00000455596 PPP2R2CQ9Y2T4 447 aa20.73■□□□□ 0.91
HMGB3-205ENST00000455596 HEBP2Q9Y5Z4 205 aa20.73■□□□□ 0.91
HMGB3-205ENST00000455596 COLEC10Q9Y6Z7 277 aa20.73■□□□□ 0.91
HMGB3-205ENST00000455596 KIF1CO43896 1103 aaKnown RBP20.72■□□□□ 0.91
HMGB3-205ENST00000455596 FGGP02679 453 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 APRTP07741 180 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 NDUFS1P28331 727 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 GRIA1P42261 906 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 KRT33BQ14525 404 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 DBN1Q16643 649 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 ZNF449Q6P9G9 518 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 PIANPQ8IYJ0 282 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 NLGN4XQ8N0W4 816 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 NLGN4YQ8NFZ3 816 aaPredicted RBP20.72■□□□□ 0.91
HMGB3-205ENST00000455596 KLHL6Q8WZ60 621 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 RMDN2Q96LZ7 410 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 SPRY4Q9C004 299 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 KIR3DX1Q9H7L2 352 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 CASS4Q9NQ75 786 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 SLC24A2Q9UI40 661 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 TMEM184BQ9Y519 407 aaPredicted RBP20.72■□□□□ 0.91
HMGB3-205ENST00000455596 LOC400499M0QZD8 3231 aa20.72■□□□□ 0.91
HMGB3-205ENST00000455596 OR51F1A6NGY5 319 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 CEP104O60308 925 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 STK17BO94768 372 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 AP2A2O94973 939 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 GSTM1P09488 218 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 ZSCAN5DPP0CG00 497 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 ADRA1DP25100 572 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 FOXN2P32314 431 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 RPL22P35268 128 aaKnown RBP20.71■□□□□ 0.91
HMGB3-205ENST00000455596 NSG1P42857 185 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 PPP1CAP62136 330 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 GSTM4Q03013 218 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 C19orf57Q0VDD7 668 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 ITIH4Q14624 930 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 TSTD2Q5T7W7 516 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 CYB5D1Q6P9G0 228 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 C4orf22Q6V702 233 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 GSTA5Q7RTV2 222 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 OOSP2Q86WS3 158 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 CLDN19Q8N6F1 224 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 UBXN4Q92575 508 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.71■□□□□ 0.91
HMGB3-205ENST00000455596 OR6C1Q96RD1 312 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 SMARCAL1Q9NZC9 954 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 RIMKLBQ9ULI2 386 aa20.71■□□□□ 0.91
HMGB3-205ENST00000455596 CCDC162PA2VCL2 907 aa20.7■□□□□ 0.9
HMGB3-205ENST00000455596 OR5K3A6NET4 321 aa20.7■□□□□ 0.9
HMGB3-205ENST00000455596 QSOX1O00391 747 aa20.7■□□□□ 0.9
HMGB3-205ENST00000455596 IFRD1O00458 451 aaPredicted RBP20.7■□□□□ 0.9
HMGB3-205ENST00000455596 NELFEP18615 380 aaKnown RBP20.7■□□□□ 0.9
HMGB3-205ENST00000455596 WT1P19544 449 aaPredicted RBP20.7■□□□□ 0.9
HMGB3-205ENST00000455596 MAP4P27816 1152 aaKnown RBP20.7■□□□□ 0.9
HMGB3-205ENST00000455596 SH3BP2P78314 561 aa20.7■□□□□ 0.9
HMGB3-205ENST00000455596 IL11RAQ14626 422 aa20.7■□□□□ 0.9
HMGB3-205ENST00000455596 LYPLAL1Q5VWZ2 237 aa20.7■□□□□ 0.9
HMGB3-205ENST00000455596 ARMC6Q6NXE6 501 aa20.7■□□□□ 0.9
HMGB3-205ENST00000455596 OR13J1Q8NGT2 312 aa20.7■□□□□ 0.9
HMGB3-205ENST00000455596 CD180Q99467 661 aa20.7■□□□□ 0.9
HMGB3-205ENST00000455596 TRIT1Q9H3H1 467 aaKnown RBP20.7■□□□□ 0.9
HMGB3-205ENST00000455596 HRASLS2Q9NWW9 162 aa20.7■□□□□ 0.9
HMGB3-205ENST00000455596 SEMA5BQ9P283 1151 aa20.7■□□□□ 0.9
HMGB3-205ENST00000455596 C1QL1O75973 258 aa20.69■□□□□ 0.9
HMGB3-205ENST00000455596 DLGAP3O95886 979 aa20.69■□□□□ 0.9
HMGB3-205ENST00000455596 LIFP15018 202 aa20.69■□□□□ 0.9
HMGB3-205ENST00000455596 CXCR5P32302 372 aa20.69■□□□□ 0.9
HMGB3-205ENST00000455596 BASP1P80723 227 aaKnown RBP20.69■□□□□ 0.9
HMGB3-205ENST00000455596 RPA4Q13156 261 aa20.69■□□□□ 0.9
HMGB3-205ENST00000455596 LY6DQ14210 128 aa20.69■□□□□ 0.9
HMGB3-205ENST00000455596 ZNF658BQ4V348 819 aaPredicted RBP20.69■□□□□ 0.9
HMGB3-205ENST00000455596 DNTTIP2Q5QJE6 756 aaKnown RBP20.69■□□□□ 0.9
HMGB3-205ENST00000455596 AFTPHQ6ULP2 937 aa20.69■□□□□ 0.9
HMGB3-205ENST00000455596 PACS1Q6VY07 963 aa20.69■□□□□ 0.9
HMGB3-205ENST00000455596 NLRP9Q7RTR0 991 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms