RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 LAMA1P25391 3075 aa9.34□□□□□ -0.91
CUX1-206ENST00000437600 ATG2BQ96BY7 2078 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 C2orf16Q68DN1 1984 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 ASPDHA6ND91 283 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 NEDD8-MDP1E9PL57 170 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 FXYD1O00168 92 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 GIPC1O14908 333 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 B3GALT4O96024 378 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 TFAP2AP05549 437 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 INHBCP55103 352 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 XIAPP98170 497 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 PLOD1Q02809 727 aaPredicted RBP9.33□□□□□ -0.92
CUX1-206ENST00000437600 NFYCQ13952 458 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 KANK2Q63ZY3 851 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 ZBTB49Q6ZSB9 765 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 SERPINA9Q86WD7 417 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 METTL25Q8N6Q8 603 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 ZNF366Q8N895 744 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 TMIGD2Q96BF3 282 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 PYCR2Q96C36 320 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 LRRC58Q96CX6 371 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 FAR2Q96K12 515 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 EGFL8Q99944 293 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 DERL2Q9GZP9 239 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 VCX3BQ9H321 246 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 MTG2Q9H4K7 406 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 PREBQ9HCU5 417 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.33□□□□□ -0.92
CUX1-206ENST00000437600 DDX18Q9NVP1 670 aaKnown RBP9.33□□□□□ -0.92
CUX1-206ENST00000437600 ZDHHC7Q9NXF8 308 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 LHX3Q9UBR4 397 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 PCTPQ9UKL6 214 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 PKP3Q9Y446 797 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 MAGED1Q9Y5V3 778 aaPredicted RBP9.33□□□□□ -0.92
CUX1-206ENST00000437600 TRAV19A0A0A6YYK7 116 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 E2F3O00716 465 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 FGF4P08620 206 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 G6PDP11413 515 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 HLA-FP30511 346 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 ADSLP30566 484 aaPredicted RBP9.33□□□□□ -0.92
CUX1-206ENST00000437600 NRIP1P48552 1158 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 CLCN4P51793 760 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 PTGR1Q14914 329 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 ABRAXAS2Q15018 415 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 HERC3Q15034 1050 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 NCEH1Q6PIU2 408 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 TMC5Q6UXY8 1006 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 Q6ZNB5 142 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 FRA10AC1Q70Z53 315 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 CHST9Q7L1S5 443 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 GRASPQ7Z6J2 395 aaPredicted RBP9.33□□□□□ -0.92
CUX1-206ENST00000437600 ST13P4Q8IZP2 240 aaPredicted RBP9.33□□□□□ -0.92
CUX1-206ENST00000437600 ELMOD1Q8N336 334 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 RNF175Q8N4F7 328 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 ZNF599Q96NL3 588 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 TMEM79Q9BSE2 394 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 TRMOQ9BU70 441 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 LIN28AQ9H9Z2 209 aaKnown RBP9.33□□□□□ -0.92
CUX1-206ENST00000437600 VCX3AQ9NNX9 186 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 IL26Q9NPH9 171 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 LATS2Q9NRM7 1088 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 GALNT8Q9NY28 637 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 IL17CQ9P0M4 197 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 PDP2Q9P2J9 529 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 DNMT3BQ9UBC3 853 aaKnown RBP9.33□□□□□ -0.92
CUX1-206ENST00000437600 SLCO3A1Q9UIG8 710 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 OR51B4Q9Y5P0 310 aa9.33□□□□□ -0.92
CUX1-206ENST00000437600 PIKFYVEQ9Y2I7 2098 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 hCG_2014768A0A024R1R8 64 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 OLFM2O95897 454 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 CLPTM1O96005 669 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 ZNF24P17028 368 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 OGNP20774 298 aaKnown RBP9.32□□□□□ -0.92
CUX1-206ENST00000437600 HNF1BP35680 557 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 MTPNP58546 118 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 MYBPC3Q14896 1274 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 CYP51A1Q16850 503 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 DGKKQ5KSL6 1271 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 TBCELQ5QJ74 424 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 C6orf136Q5SQH8 315 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 CHST15Q7LFX5 561 aaPredicted RBP9.32□□□□□ -0.92
CUX1-206ENST00000437600 KIAA2013Q8IYS2 634 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 TTC30BQ8N4P2 665 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 OR4F6Q8NGB9 312 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 RHEBL1Q8TAI7 183 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 ALG14Q96F25 216 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 PHF12Q96QT6 1004 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 SPATA16Q9BXB7 569 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 IPPKQ9H8X2 491 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 ZFYVE1Q9HBF4 777 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 DNAAF2Q9NVR5 837 aaKnown RBP9.32□□□□□ -0.92
CUX1-206ENST00000437600 HACD3Q9P035 362 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 HSFX1Q9UBD0 423 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 CNOT6Q9ULM6 557 aaKnown RBP9.32□□□□□ -0.92
CUX1-206ENST00000437600 RNF11Q9Y3C5 154 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 GPR45Q9Y5Y3 372 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 WNT6Q9Y6F9 365 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 FRYLO94915 3013 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 KNL1Q8NG31 2342 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 RNF103-CHMP3A0A140T963 221 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms