RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TSPAN12O95859 305 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 MAPK9P45984 424 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 RABIFP47224 123 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 OR4D1Q15615 310 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 LIPMQ5VYY2 423 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 MAMSTRQ6ZN01 415 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 NEK10Q6ZWH5 1172 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 AMZ2Q86W34 360 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 GPSM1Q86YR5 675 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 SPNS2Q8IVW8 549 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 CFAP206Q8IYR0 622 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 CADM4Q8NFZ8 388 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 FAM174AQ8TBP5 190 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 ZNF75CPQ92670 426 aaPredicted RBP16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 CHMP6Q96FZ7 201 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 LINC00615Q96LM1 132 aaPredicted RBP16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 TRIM54Q9BYV2 358 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 COG4Q9H9E3 785 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 AASDHPPTQ9NRN7 309 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 CA5BQ9Y2D0 317 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 DNMT3AQ9Y6K1 912 aaPredicted RBP16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 C17orf113A0A1B0GUU1 675 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 A0A1W2PPC4 97 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 MGAT4DA6NG13 374 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 SRRM3A6NNA2 597 aaPredicted RBP16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 G3V2L1 256 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 CHUKO15111 745 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 PI15O43692 258 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 C8GP07360 202 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 GRK2P25098 689 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 ARHGAP8P85298 464 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 STX3Q13277 289 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 CFAP157Q5JU67 520 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 ENPP7Q6UWV6 458 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 GCNT7Q6ZNI0 430 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 FRMD1Q8N878 549 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 OR56A4Q8NGH8 313 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 OR2L2Q8NH16 312 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 FAM107BQ9H098 131 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 EPN3Q9H201 632 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 OXSMQ9NWU1 459 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 PSD3Q9NYI0 1048 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 NUDT4Q9NZJ9 180 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 CD274Q9NZQ7 290 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 DLGAP2Q9P1A6 1054 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 SIRPGQ9P1W8 387 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 KLQ9UEF7 1012 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 CEP192Q8TEP8 1941 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 ANKRD12Q6UB98 2062 aa16.8■□□□□ 0.28
CCDC28B-202ENST00000421922 GMNCA6NCL1 334 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 PRR33A8MZF0 331 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 H0Y8X5 98 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 H3BM21 787 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 UBXN8O00124 270 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 LILRB5O75023 590 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 SERPINE1P05121 402 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 CYP2A7P20853 494 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 MAP4P27816 1152 aaKnown RBP16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 PREPP48147 710 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 SP140Q13342 867 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 PTK2BQ14289 1009 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 RGS9BPQ6ZS82 235 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 CPLX4Q7Z7G2 160 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 FBXO39Q8N4B4 442 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 TMEM145Q8NBT3 493 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 PPP4R1Q8TF05 950 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 CARS2Q9HA77 564 aaKnown RBP16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 CYP4F12Q9HCS2 524 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 SLC17A4Q9Y2C5 497 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 DNAJC16Q9Y2G8 782 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 PRKAB1Q9Y478 270 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 GPSM3Q9Y4H4 160 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 TECTAO75443 2155 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 CCDC163A0A0D9SF12 145 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 PRSS38A1L453 326 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 TMEM202A6NGA9 273 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 METTL12A8MUP2 240 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 KLF11O14901 512 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 RRP9O43818 475 aaKnown RBP16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 DLX3O60479 287 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 GPC4O75487 556 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 IPO13O94829 963 aaKnown RBP16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 SLCO2B1O94956 709 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 HIST1H2AGP0C0S8 130 aaPredicted RBP16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 ACP5P13686 325 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 HIST1H2ADP20671 130 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 CD27P26842 260 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 GNPDA1P46926 289 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 PFN3P60673 137 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 RPA4Q13156 261 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 GBX1Q14549 363 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 Q6ZSR6 202 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 ZCCHC23Q6ZST2 131 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 FAM47EQ6ZV65 393 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 UBE2R2Q712K3 238 aaPredicted RBP16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 CHST15Q7LFX5 561 aaPredicted RBP16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 ZNF547Q8IVP9 402 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 OXR1Q8N573 874 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 DEFB119Q8N690 84 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms