RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 KCNK6Q9Y257 313 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 ACTL7BQ9Y614 415 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 LTA4HP09960 611 aaKnown RBP17.72■□□□□ 0.43
SDC1-203ENST00000403076 CBSLP0DN79 551 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 BRAFP15056 766 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 CBSP35520 551 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 CCNFP41002 786 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 CSRP3P50461 194 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 CTBSQ01459 385 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 SLC18A2Q05940 514 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 ILF3Q12906 894 aaKnown RBP eCLIP17.72■□□□□ 0.43
SDC1-203ENST00000403076 LRP8Q14114 963 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 FAM83EQ2M2I3 478 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 PRAMEF14Q5SWL7 426 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 MYO1HQ8N1T3 1032 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 CEP76Q8TAP6 659 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 ANKRD49Q8WVL7 239 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 ALKBH8Q96BT7 664 aaKnown RBP17.72■□□□□ 0.43
SDC1-203ENST00000403076 LOXL4Q96JB6 756 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 UNKQ9C0B0 810 aaKnown RBP17.72■□□□□ 0.43
SDC1-203ENST00000403076 TCEAL2Q9H3H9 227 aaPredicted RBP17.72■□□□□ 0.43
SDC1-203ENST00000403076 APOBEC3BQ9UH17 382 aaKnown RBP17.72■□□□□ 0.43
SDC1-203ENST00000403076 DCDC2Q9UHG0 476 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 KNL1Q8NG31 2342 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 SLC5A10A0PJK1 596 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 H3BM21 787 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 SNX2O60749 519 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 GPC4O75487 556 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 KLHL2O95198 593 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 COL6A2P12110 1019 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 ENO3P13929 434 aaPredicted RBP17.72■□□□□ 0.43
SDC1-203ENST00000403076 CREB1P16220 341 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 IDSP22304 550 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 HPDP32754 393 aaPredicted RBP17.72■□□□□ 0.43
SDC1-203ENST00000403076 SLC26A3P40879 764 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 KIF19Q2TAC6 998 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 AGAP9Q5VTM2 703 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 KLC3Q6P597 504 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 FAM83HQ6ZRV2 1179 aaPredicted RBP17.72■□□□□ 0.43
SDC1-203ENST00000403076 SH2D5Q6ZV89 423 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 NXNL1Q96CM4 212 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 APOPT1Q96IL0 206 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 SCYL1Q96KG9 808 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 NMRAL1Q9HBL8 299 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.72■□□□□ 0.43
SDC1-203ENST00000403076 KLF15Q9UIH9 416 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 SNX11Q9Y5W9 270 aa17.72■□□□□ 0.43
SDC1-203ENST00000403076 EIF3FO00303 357 aaPredicted RBP17.71■□□□□ 0.43
SDC1-203ENST00000403076 GLRA3O75311 464 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 SLCO2B1O94956 709 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 WISP3O95389 354 aaPredicted RBP17.71■□□□□ 0.43
SDC1-203ENST00000403076 CSF2P04141 144 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 AK4P27144 223 aaPredicted RBP17.71■□□□□ 0.43
SDC1-203ENST00000403076 ACTR1BP42025 376 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 ACTR1AP61163 376 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 HNRNPKP61978 463 aaKnown RBP eCLIP17.71■□□□□ 0.43
SDC1-203ENST00000403076 RPA4Q13156 261 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 TSNAXIP1Q2TAA8 658 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 PRRT3Q5FWE3 981 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 PEAR1Q5VY43 1037 aaPredicted RBP17.71■□□□□ 0.43
SDC1-203ENST00000403076 LRRC8EQ6NSJ5 796 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 PIWIL4Q7Z3Z4 852 aaKnown RBP17.71■□□□□ 0.43
SDC1-203ENST00000403076 TAF8Q7Z7C8 310 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 VRK3Q8IV63 474 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 CENPLQ8N0S6 344 aaPredicted RBP17.71■□□□□ 0.43
SDC1-203ENST00000403076 PLD6Q8N2A8 252 aaKnown RBP17.71■□□□□ 0.43
SDC1-203ENST00000403076 BANPQ8N9N5 519 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 PRSS33Q8NF86 280 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 GLMNQ92990 594 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 UBXN10Q96LJ8 280 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 GSDMCQ9BYG8 508 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 ARRDC1-AS1Q9H2J1 176 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 ZNF358Q9NW07 568 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 GULP1Q9UBP9 304 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 ACSL5Q9ULC5 683 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 PSMD13Q9UNM6 376 aa17.71■□□□□ 0.43
SDC1-203ENST00000403076 CUL9Q8IWT3 2517 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 PDZK1P1A8MUH7 402 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 DLL1O00548 723 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 EPN2O95208 641 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 TOP3BO95985 862 aaKnown RBP17.7■□□□□ 0.42
SDC1-203ENST00000403076 GSTA1P08263 222 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 NME1P15531 152 aaKnown RBP17.7■□□□□ 0.42
SDC1-203ENST00000403076 RPL10P27635 214 aaKnown RBP17.7■□□□□ 0.42
SDC1-203ENST00000403076 PDHA2P29803 388 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 CRHR1P34998 444 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 CTSKP43235 329 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 GLRBP48167 497 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 KPNA2P52292 529 aaKnown RBP17.7■□□□□ 0.42
SDC1-203ENST00000403076 DMPKQ09013 629 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 DLG1Q12959 904 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 ABRQ12979 859 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 C1orf61Q13536 156 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 SEPT7Q16181 437 aaKnown RBP17.7■□□□□ 0.42
SDC1-203ENST00000403076 ZNF658BQ4V348 819 aaPredicted RBP17.7■□□□□ 0.42
SDC1-203ENST00000403076 METRNLQ641Q3 311 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 SLC30A9Q6PML9 568 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 CLEC14AQ86T13 490 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 CFAP61Q8NHU2 1237 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 CCL4L1Q8NHW4 92 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms